Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001123110.2 | Gene: | lgc-24 / 6418837 | WormBaseID: | WBGene00045385 | Length: | 389 | Species: | Caenorhabditis elegans |
Alignment Length: | 397 | Identity: | 86/397 - (21%) |
---|---|---|---|
Similarity: | 149/397 - (37%) | Gaps: | 77/397 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 VTIDMILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQ 70
Fly 71 IMTTNLWVEQSWYDYKLKWEPKEYGGVEML------HVPSDHIWRPDIVLYNNADGNF-EVTLA- 127
Fly 128 ---TKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTC-VMKFGSWTYDGFQVDLRHIDELNG 188
Fly 189 TNVVEVGVDLSEFYTSVEWDILEVPAVR----------NEKFYTCCDEPY-------------LD 230
Fly 231 ITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFF------LL 289
Fly 290 LAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFL 354
Fly 355 VMRRPLY 361 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 53/249 (21%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 27/116 (23%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
lgc-24 | NP_001123110.2 | LGIC_ECD | 62..226 | CDD:355788 | 40/182 (22%) |
Cys-loop | 160..174 | CDD:349787 | 4/13 (31%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.910 |