DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and lgc-24

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_001123110.2 Gene:lgc-24 / 6418837 WormBaseID:WBGene00045385 Length:389 Species:Caenorhabditis elegans


Alignment Length:397 Identity:86/397 - (21%)
Similarity:149/397 - (37%) Gaps:77/397 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VTIDMILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQ 70
            :.|.:.||:|...:..:.....:|..||..|||..:  .|...:.|.....|::..:..::..:.
 Worm     8 LVIHIHLVVSQWETGKSFTVLTKLRSDLFKNYNGSM--PVGKGEYLEATPSLEVGFIHFIDDDHG 70

  Fly    71 IMTTNLWVEQSWYDYKLKWEPKEYGGVEML------HVPSDHIWRPDIVLYNNADGNF-EVTLA- 127
            .|:..:..|.:|.|.:|||.|..|.||..:      ....::.|.| ||.|.:.|..: |:.|. 
 Worm    71 FMSVVINAELTWIDERLKWNPANYSGVREIVEKTFEFRKDNNCWMP-IVKYRSYDRRYSELDLLE 134

  Fly   128 ---TKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTC-VMKFGSWTYDGFQVDLRHIDELNG 188
               .:..::|.|.::.....:..:.|:.....:|.|.|.| :|...:...|.|    |.:.. ||
 Worm   135 FSDARTLISYKGEIKTALQTMVTTKCQFSFGEYPNDYQNCSIMLIPNQNADEF----RFVSP-NG 194

  Fly   189 TNVVEVGVDLSEFYTSVEWDILEVPAVR----------NEKFYTCCDEPY-------------LD 230
                         |.:.:::.||..|||          :..|||..:..:             .:
 Worm   195 -------------YCNPKFENLEHRAVRVHDLHLMGVESNIFYTFANTYFTAEEVTGFEYMAKTE 246

  Fly   231 ITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFF------LL 289
            ..||:..:|......|.|.||.:.||...|:....|:        ..||......||      |.
 Worm   247 FRFNLMFKRVNKLLNVKLSIPSILISMFLIIAGLFPN--------GYSIFGYAYCFFVEVMHGLY 303

  Fly   290 LAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFL 354
            :::|:|.....:|..|...|..:|...|..|..  |.:::.|:.:.....|   .||.:.  |..
 Worm   304 VSKILPNDIRGIPYHGALALCFLIETVFLFCWK--VFSVYARNQKLFAQLP---NVFADN--RVF 361

  Fly   355 VMRRPLY 361
            |::...|
 Worm   362 VLKFVFY 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 53/249 (21%)
Neur_chan_memb 248..>359 CDD:280999 27/116 (23%)
Neur_chan_memb <683..760 CDD:280999
lgc-24NP_001123110.2 LGIC_ECD 62..226 CDD:355788 40/182 (22%)
Cys-loop 160..174 CDD:349787 4/13 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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