DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha3 and htr3a

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_009293684.1 Gene:htr3a / 571641 ZFINID:ZDB-GENE-071012-5 Length:482 Species:Danio rerio


Alignment Length:457 Identity:127/457 - (27%)
Similarity:214/457 - (46%) Gaps:69/457 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYK 86
            ||....||.:.|.:.|.|.||||.:...:.||.|.|.:..:::|:.|||::||.:|..|.|.|..
Zfish    34 ANATLVRLNEFLSAGYKKGVRPVRDWRQSTTVAIDLMVYAILNVDEKNQVLTTYVWYRQQWTDEF 98

  Fly    87 LKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYT-----GRVEWRPPAIY 146
            |.|:|:|:..|:.:.:|:.:||.|||::      |..|.:.....:.|.     |.|....|...
Zfish    99 LMWDPEEFDEVKKISIPTANIWIPDILI------NEFVDVGKSPDIPYVYVGHDGLVSNYKPIQV 157

  Fly   147 KSSCEIDVEYFPFDEQTCVMKFGSW--TYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDI 209
            .::|.:::..||:|.|.|.:.|.||  |.....:.|....|       .|..|.|.|....||::
Zfish   158 VTACSLNIYNFPYDVQKCSLTFQSWLHTTKDINITLMRSPE-------AVKTDKSVFMNQGEWEL 215

  Fly   210 LEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVS 274
            |.|.:..| .|....|:.|.::.|::.:||:.|||||||::|.|.:..:.|:.||||.||||:||
Zfish   216 LHVLSTYN-AFSIDNDDYYAEMKFHVVIRRRPLFYTVNLLLPSMFLMVMDIVGFYLPPDSGERVS 279

  Fly   275 LSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMA 339
            ..|::||..:||.:::::.:|.|::..||:|.:.:..|.|...|:..:||::.:..:......:.
Zfish   280 FKITLLLGYSVFLIIVSDTLPATAIGTPLIGVYFVVCMALLVISLTESVLIVRLVHKQDLQSRVP 344

  Fly   340 PWVRTVFINQLPRFLVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMHHSPK 404
            .||:.:.:.:....|.:|..                :.|:   .|.|...||          ..|
Zfish   345 QWVKHLVLEKATVLLCIRNK----------------KICS---FRSQGSDLP----------LYK 380

  Fly   405 TTSRSTSPHLQHRVQTYNLMDEC------GMGMGGGASTITGHLSSLYPPTMSTANQQTSTTSSL 463
            ..:.:|:.|..|.        .|      |..:|.|   ::.|.|.  ||.|....::.:|....
Zfish   381 ENNMNTAIHCNHH--------SCEGSRDSGRTLGLG---LSAHESG--PPVMDGILREITTIRQF 432

  Fly   464 ID 465
            ::
Zfish   433 LE 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 67/221 (30%)
Neur_chan_memb 248..>359 CDD:280999 33/110 (30%)
Neur_chan_memb <683..760 CDD:280999
htr3aXP_009293684.1 LIC 21..479 CDD:273305 127/457 (28%)
Neur_chan_LBD 40..246 CDD:280998 67/219 (31%)
Neur_chan_memb 253..479 CDD:280999 52/224 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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