DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and CHRNA10

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_065135.2 Gene:CHRNA10 / 57053 HGNCID:13800 Length:450 Species:Homo sapiens


Alignment Length:403 Identity:160/403 - (39%)
Similarity:228/403 - (56%) Gaps:39/403 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 AKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWE 90
            |.:|:.||.:||...:|||.:....|.|.:::.|||:||::.:||::|..||:.|.|.|..|:|:
Human    30 ALKLFRDLFANYTSALRPVADTDQTLNVTLEVTLSQIIDMDERNQVLTLYLWIRQEWTDAYLRWD 94

  Fly    91 PKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVE 155
            |..|||::.:.:||..:|||||||||.||.....:.:|...|.:.|.|.|..|||.:|||.:||.
Human    95 PNAYGGLDAIRIPSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRWDAPAITRSSCRVDVA 159

  Fly   156 YFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNEKF 220
            .||||.|.|.:.|||||:.|.|:|:|.    .|     ....|::|..:|||.:|.:||.|....
Human   160 AFPFDAQHCGLTFGSWTHGGHQLDVRP----RG-----AAASLADFVENVEWRVLGMPARRRVLT 215

  Fly   221 YTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTV 285
            |.||.|||.|:||.:.:||:...|..||::||:.||.|..|.|:||:||||||||.:::||:|||
Human   216 YGCCSEPYPDVTFTLLLRRRAAAYVCNLLLPCVLISLLAPLAFHLPADSGEKVSLGVTVLLALTV 280

  Fly   286 FFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQL 350
            |.|||||.:||.. .|||:||:.:.||.:.|||..:|:|::|:|:..|....:..|.|.:.:..|
Human   281 FQLLLAESMPPAE-SVPLIGKYYMATMTMVTFSTALTILIMNLHYCGPSVRPVPAWARALLLGHL 344

  Fly   351 PRFLVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLP--------PPVALSRMHHSPKTTS 407
            .|.|.:|....|               | |.....::.|.|        ||....   |.|:...
Human   345 ARGLCVRERGEP---------------C-GQSRPPELSPSPQSPEGGAGPPAGPC---HEPRCLC 390

  Fly   408 RSTSPHLQHRVQT 420
            |..:  |.|.|.|
Human   391 RQEA--LLHHVAT 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 92/214 (43%)
Neur_chan_memb 248..>359 CDD:280999 52/110 (47%)
Neur_chan_memb <683..760 CDD:280999
CHRNA10NP_065135.2 LIC 31..442 CDD:273305 159/402 (40%)
Neur_chan_LBD 32..235 CDD:280998 90/211 (43%)
Neur_chan_memb 243..434 CDD:280999 66/181 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..380 6/40 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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