DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and chrnb4

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_696993.2 Gene:chrnb4 / 568566 ZFINID:ZDB-GENE-120809-1 Length:525 Species:Danio rerio


Alignment Length:759 Identity:243/759 - (32%)
Similarity:333/759 - (43%) Gaps:282/759 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 MILVLSFISSSTANPDAKRLYDDLLS--NYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIM 72
            ::..||...|.......:||.:.||.  .||||:||.:|.|:.:||.:::.|:|||.||.:.|||
Zfish    21 LLCALSLARSGVCADSEERLMNWLLGKHRYNKLIRPALNRTERVTVLLQVSLAQLISVNEREQIM 85

  Fly    73 TTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 137
            |||:|:.|:|.||:|.|:|.||.|::.|.:||.|||.|||||||||||.:|||:.|.|.:.:.|.
Zfish    86 TTNVWLTQNWNDYRLSWDPAEYEGIDKLRIPSRHIWLPDIVLYNNADGTYEVTVFTNAIVLFNGS 150

  Fly   138 VEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFY 202
            :.|.|||||||:|:|:|::||||:|.|.:||.|||||..::||.         :......:.:|.
Zfish   151 IAWLPPAIYKSACKIEVKHFPFDQQNCTLKFRSWTYDHTEIDLL---------LKSDAASMDDFT 206

  Fly   203 TSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPS 267
            .|.|||||.:|..|.   .:..|..|:|:|::..::||.||||:||||||:.|:.|.||||||||
Zfish   207 PSGEWDILALPGRRT---VSPLDATYVDLTYDFIIKRKPLFYTINLIIPCVLITSLAILVFYLPS 268

  Fly   268 DSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRS 332
            |.|||::|.||:||:||||.||:::|:|||||.|||:||:::|||:|.||||..:|.|||:|.||
Zfish   269 DCGEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLIGKYLMFTMVLVTFSIITSVCVLNVHHRS 333

  Fly   333 PQTHTMAPWVRTVFINQLPRFLVMRRPL-YPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVAL 396
            |.||:|..||:.||:.:||..|.|:||. :...:.::.:|||       |.|.|           
Zfish   334 PSTHSMPAWVKIVFLVRLPALLFMQRPRGHSARQRLRQNRRL-------LGLAD----------- 380

  Fly   397 SRMHHSPKTTSRSTSPHLQHRVQTYNLMDECGMGMGGGASTITGHLSSLYPPTMSTANQQTSTTS 461
                    |..||.                                             ..|:.|
Zfish   381 --------TPGRSV---------------------------------------------MCSSAS 392

  Fly   462 SLIDAQYHNQYQQTGGSLLDHP-LTPTKFRQMTSTSSQTGQNGSGNGNG-NGGYGGHGQSGGHHL 524
            :|:.|        :..|.|..| |...|           |..||....| |.|:|......|:.|
Zfish   393 ALLAA--------SSASALSSPGLLYNK-----------GHFGSRRAEGLNNGHGSAQDLKGNRL 438

  Fly   525 YRQQSSCSANFSPLPQHAHQAHASTTTSDLGMANPNVIKSTTTVNSVATASTLADSCCSGTIQIH 589
            |                                                                
Zfish   439 Y---------------------------------------------------------------- 439

  Fly   590 QGMGAGAACQSSELLHHQQLHHQQMHHQQQQQQQQQHHHHQRPTTSAAAAAAAAAAGGPSTSAAA 654
                                                                             
Zfish   440 ----------------------------------------------------------------- 439

  Fly   655 AAAAAAAAAGTPPPPPPPAGVCDILPACQREGGPHCCSGRGNVRQRWHTCPELHKAMDGVTYIAD 719
                                       |:                 |.:  |:.:|:|||.|:||
Zfish   440 ---------------------------CE-----------------WGS--EIQEAVDGVRYVAD 458

  Fly   720 QTRKEEESTRVKEDWKYVAMVLDRLFLWIFTIAVVVGTAGIILQ 763
            .....::...|.|||||||||:||||||||.|..||||.|:.||
Zfish   459 HMMGNDDDQSVIEDWKYVAMVVDRLFLWIFVIVCVVGTLGLFLQ 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 100/216 (46%)
Neur_chan_memb 248..>359 CDD:280999 68/110 (62%)
Neur_chan_memb <683..760 CDD:280999 32/76 (42%)
chrnb4XP_696993.2 LIC 14..501 CDD:273305 241/756 (32%)
Neur_chan_LBD 37..242 CDD:280998 100/216 (46%)
Neur_chan_memb 249..500 CDD:280999 132/515 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6399
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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