DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and ort

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster


Alignment Length:504 Identity:100/504 - (19%)
Similarity:176/504 - (34%) Gaps:175/504 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FQVTIDMILVLSF-------ISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQ 61
            ||:.|.:|..:..       ...|.|..|.  |.:| :..|:|: ||.........|...:.:..
  Fly     3 FQIIILVICTICMKHYAKGEFQQSLAITDI--LPED-IKRYDKM-RPPKKEGQPTIVYFHVTVMG 63

  Fly    62 LIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVP-SDHIWRPDIVLYNNADGNFEVT 125
            |..::..:.....:::..|:|.|::|:..........:|.|. ..::||||....|.....|:  
  Fly    64 LDSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQ-- 126

  Fly   126 LATKATLNYTGRVEWRPPAIYKS-------------SCEIDVEYFPFDEQTCVMKFGSWTYDGFQ 177
                 |:.......|    :||.             ||.::...:|.|.|.|.::..|       
  Fly   127 -----TMTIPNHYMW----LYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQMES------- 175

  Fly   178 VDLRH-IDEL----NGTN--VVEVGVDLSEFYTSVEWDILEVPAVRNEKF----------YTCCD 225
              |.| .|:|    :.|.  ||:..::|.           :|..:|||..          :||  
  Fly   176 --LSHTTDDLIFQWDPTTPLVVDENIELP-----------QVALIRNETADCTQVYSTGNFTC-- 225

  Fly   226 EPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYL-PSDSGEKVSLSISILLSLTVFFLL 289
               |::.|  |::|:.::|..|..||...|..::.:.|:: |..:..:|:|.::.||:|:.....
  Fly   226 ---LEVVF--TLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAK 285

  Fly   290 LAEIIPPTSLVVPLLGKFVLFTMILDTF-SICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRF 353
            ....:||.|           :...:|.| |:|                       |||:     |
  Fly   286 SQSSLPPVS-----------YLKAVDAFMSVC-----------------------TVFV-----F 311

  Fly   354 LVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMHHSPKTTSRSTSPHLQHRV 418
            :.:..  |.:..::.|.                 .|:|.|:|     :.||..: ...|..:   
  Fly   312 MALME--YCLINIVLSD-----------------TPIPKPMA-----YPPKPVA-GDGPKKE--- 348

  Fly   419 QTYNLMDECGMGMGGGASTITGHLSSLYPP--TMSTANQQTSTTSSLID 465
                         |.||           ||  :.|||::|.:|...|.|
  Fly   349 -------------GEGA-----------PPGGSNSTASKQQATMLPLAD 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 49/245 (20%)
Neur_chan_memb 248..>359 CDD:280999 21/112 (19%)
Neur_chan_memb <683..760 CDD:280999
ortNP_524406.1 LIC 31..481 CDD:273305 94/476 (20%)
Neur_chan_LBD 38..235 CDD:280998 46/235 (20%)
Neur_chan_memb 243..>334 CDD:280999 26/148 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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