DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and ort

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster


Alignment Length:501 Identity:100/501 - (19%)
Similarity:176/501 - (35%) Gaps:169/501 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FQVTIDMILVLSF-------ISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQ 61
            ||:.|.:|..:..       ...|.|..|.  |.:| :..|:|: ||.........|...:.:..
  Fly     3 FQIIILVICTICMKHYAKGEFQQSLAITDI--LPED-IKRYDKM-RPPKKEGQPTIVYFHVTVMG 63

  Fly    62 LIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVP-SDHIWRPDIVLYNNADGNFEVT 125
            |..::..:.....:::..|:|.|::|:..........:|.|. ..::||||....|.....|:  
  Fly    64 LDSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQ-- 126

  Fly   126 LATKATLNYTGRVEWRPPAIYKS-------------SCEIDVEYFPFDEQTCVMKFGSWTYDGFQ 177
                 |:.......|    :||.             ||.::...:|.|.|.|.::..|       
  Fly   127 -----TMTIPNHYMW----LYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQMES------- 175

  Fly   178 VDLRH-IDEL----NGTN--VVEVGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDEPY------- 228
              |.| .|:|    :.|.  ||:..::|.           :|..:|||.  ..|.:.|       
  Fly   176 --LSHTTDDLIFQWDPTTPLVVDENIELP-----------QVALIRNET--ADCTQVYSTGNFTC 225

  Fly   229 LDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYL-PSDSGEKVSLSISILLSLTVFFLLLAE 292
            |::.|  |::|:.::|..|..||...|..::.:.|:: |..:..:|:|.::.||:|:........
  Fly   226 LEVVF--TLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQS 288

  Fly   293 IIPPTSLVVPLLGKFVLFTMILDTF-SICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLVM 356
            .:||.|           :...:|.| |:|                       |||:     |:.:
  Fly   289 SLPPVS-----------YLKAVDAFMSVC-----------------------TVFV-----FMAL 314

  Fly   357 RRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMHHSPKTTSRSTSPHLQHRVQTY 421
            ..  |.:..::.|.                 .|:|.|:|     :.||..: ...|..:      
  Fly   315 ME--YCLINIVLSD-----------------TPIPKPMA-----YPPKPVA-GDGPKKE------ 348

  Fly   422 NLMDECGMGMGGGASTITGHLSSLYPP--TMSTANQQTSTTSSLID 465
                      |.||           ||  :.|||::|.:|...|.|
  Fly   349 ----------GEGA-----------PPGGSNSTASKQQATMLPLAD 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 50/245 (20%)
Cys-loop 150..164 CDD:349832 4/13 (31%)
LGIC_TM_nAChR 242..>331 CDD:349866 19/90 (21%)
TM1 helix 242..266 CDD:349866 6/24 (25%)
TM2 helix 274..295 CDD:349866 4/20 (20%)
TM3 helix 306..328 CDD:349866 4/22 (18%)
Neur_chan_memb <683..760 CDD:460753
ortNP_524406.1 LIC 31..481 CDD:455710 94/473 (20%)
LGIC_ECD_HisCl 51..235 CDD:349793 42/218 (19%)
Cys-loop 155..169 CDD:349793 4/13 (31%)
Blue background indicates that the domain is not in the aligned region.

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