DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and LOC4578226

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_061513968.1 Gene:LOC4578226 / 4578226 VectorBaseID:AGAMI1_011717 Length:439 Species:Anopheles gambiae


Alignment Length:403 Identity:97/403 - (24%)
Similarity:161/403 - (39%) Gaps:72/403 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FQVTIDMILVLSFISSSTA---NPDAK------RLYDDLL-SNYNKLVRPVVNVTDALTVRIKLK 58
            |:|.:.:...|:......|   |.||:      ||...|. ::|:|..|||.:...|..|.|.:.
Mosquito     2 FRVIVYLTAFLTIFKIHCAVAFNCDAEQSSIEGRLQKQLFCTDYDKSQRPVEHHETATNVSISIY 66

  Fly    59 LSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFE 123
            :...........:..:| |:..||.|..|.|:..:| |::||:|....||||.|..|:....|  
Mosquito    67 MKNYALYEYDPSLHISN-WLSVSWKDEFLTWDRADY-GIDMLNVDESEIWRPMITSYSKKQLN-- 127

  Fly   124 VTLAT-----KATLNYTGRVEWRPPAIYKSSC---EIDVEYFPFDEQTCVMKFGSWTYDGFQVDL 180
             |:..     |..|.:||.|....|..|::.|   .||   :|||...|.:.|.||        |
Mosquito   128 -TIDRSCNDHKCELKHTGEVSCISPCTYEAHCTSTNID---WPFDVMDCRLYFSSW--------L 180

  Fly   181 RHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYT 245
            ::..|||.|....|...... :....|.:|   :...|......|:.|..:.:.....|....||
Mosquito   181 QYKSELNMTGASNVSTSYVT-HNHYSWKLL---SAEKENSNHSDDDTYPSVVYVFKFERHMGLYT 241

  Fly   246 VNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLL-------AEIIPPTSLVVPL 303
            . ::.|...:..|:.||.:|...|.|::.:..:..:....|...|       .|.:|        
Mosquito   242 A-ILTPGFLLVVLSWLVLWLDYSSSERLYILYATCIGHFTFMEFLFWHQSHQTEDVP-------- 297

  Fly   304 LGKFVLF---TMILDTFSICVTVLVLNIHFRSPQTHT----MAPWVRTVFINQLPRFLVMRRPLY 361
              |.:||   ::.::.|::.:|::   :.:.:|:.|:    :..|...|....|.|.|::|    
Mosquito   298 --KMLLFYRDSLFINVFTVILTII---LKYTNPKPHSPERLIDRWAFRVASTSLGRVLLLR---- 353

  Fly   362 PISEMIKSSRRLM 374
              ...|.|.|.|:
Mosquito   354 --GHFIGSKRTLL 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 62/232 (27%)
Cys-loop 150..164 CDD:349832 6/16 (38%)
LGIC_TM_nAChR 242..>331 CDD:349866 18/98 (18%)
TM1 helix 242..266 CDD:349866 6/23 (26%)
TM2 helix 274..295 CDD:349866 3/27 (11%)
TM3 helix 306..328 CDD:349866 5/24 (21%)
Neur_chan_memb <683..760 CDD:460753
LOC4578226XP_061513968.1 None
Blue background indicates that the domain is not in the aligned region.

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