DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and LOC4577940

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_061513781.1 Gene:LOC4577940 / 4577940 VectorBaseID:AGAMI1_009486 Length:442 Species:Anopheles gambiae


Alignment Length:345 Identity:73/345 - (21%)
Similarity:139/345 - (40%) Gaps:56/345 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VTIDMILVLSFISSSTANPDAKR------LYDDLLSN-YNKLVRPVVNVTDALTVRIKLKLSQLI 63
            :.:.:::...|.|:|:.|.|.||      :...|..| |:..:||..:..|::.:.....|.. .
Mosquito     8 IYLPLLVAFLFDSASSINCDKKRDNVQYTIKQHLFCNGYDPKIRPAKSEFDSINITTYAVLYS-F 71

  Fly    64 DVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFE----- 123
            |::....:|:..:.....|.|..|.|:..::..:..|::.:|.||.|.   :.|.:.::|     
Mosquito    72 DISEYRSVMSLQVNYYMHWQDSSLAWDASDWSNITTLNINNDEIWSPQ---FENINSDYEGQPSV 133

  Fly   124 VTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNG 188
            ..|:....|:..|.:...|.....:.|..|...:||:...|.|.|.:       .|...:||:|.
Mosquito   134 SCLSPDCLLHEDGGISCSPVCRISAKCSSDYTRWPFNTLVCRMWFTN-------RDKELVDEVNF 191

  Fly   189 TNVVEVGVDLSEFYTSVEWDI---------LEVPAVRN----EKFYTCCDEPYLDITFNITMRRK 240
            ..|:.. :..:....:.:|.:         |.:|...:    |..:.....|:|.|..       
Mosquito   192 LPVITY-LPSNHHLPTTKWCVTSVSSNKTQLSIPGATSRTVEELEFNLEHSPHLTIAI------- 248

  Fly   241 TLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLG 305
                   :.:|...:|.|.:.|..|.|...||:.:.   |:.:...|.||.::..||. .:|.:.
Mosquito   249 -------IYLPAFALSMLNMFVCLLDSRVKEKIVIP---LICMVFHFQLLQQMRNPTP-EIPGVV 302

  Fly   306 KFVLFTMILDTFSICVTVLV 325
            .|::.:||| ||.:.|..|:
Mosquito   303 LFIIASMIL-TFLLFVITLI 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 46/242 (19%)
Cys-loop 150..164 CDD:349832 4/13 (31%)
LGIC_TM_nAChR 242..>331 CDD:349866 23/84 (27%)
TM1 helix 242..266 CDD:349866 4/23 (17%)
TM2 helix 274..295 CDD:349866 4/20 (20%)
TM3 helix 306..328 CDD:349866 8/20 (40%)
Neur_chan_memb <683..760 CDD:460753
LOC4577940XP_061513781.1 None
Blue background indicates that the domain is not in the aligned region.

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