DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and chrne

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_001314812.1 Gene:chrne / 445315 ZFINID:ZDB-GENE-040808-32 Length:517 Species:Danio rerio


Alignment Length:377 Identity:144/377 - (38%)
Similarity:231/377 - (61%) Gaps:13/377 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTN 75
            |.:|:.:...|.|.:: :|..|...||:|.:||..:..:.:.|::||.|:.||.:|.|.:.:|||
Zfish    15 IALLATVLQVTGNEES-QLIADKFKNYSKNIRPARHADEKVKVQVKLTLTNLISLNEKEETLTTN 78

  Fly    76 LWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 140
            :|:|..|:||:|.|...||..:|.:.||...:|.|||||.||.||.|:|.......::..|.:.|
Zfish    79 VWIEIQWHDYRLAWNTSEYHDIEQIRVPYYTVWLPDIVLENNIDGKFDVAYYANVLISSDGSMYW 143

  Fly   141 RPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSV 205
            .|||||:|:|.|::.|||||.|.|.:.|.|.||...::|:...::.||..:..|.:|...|..:.
Zfish   144 LPPAIYRSTCAIEITYFPFDWQNCTLVFRSQTYSANEIDIVLAEDENGKPIEWVDIDPEAFTENG 208

  Fly   206 EWDILEVPA--VRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSD 268
            ||.|...||  :.|:: |:..|..|.::.:||.::||.|||.:|:|:||..||.|.:|.::||:.
Zfish   209 EWAIKHRPARKLTNQR-YSPDDLEYQEVYYNIIIQRKPLFYVINIILPCSLISSLVVLAYFLPAK 272

  Fly   269 S-GEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRS 332
            : |:|:::|||:||:.|||.:|:::.||.|||.|||:||:::|.|.:.|..:...::|||...||
Zfish   273 AGGQKLTVSISVLLAQTVFLILISQKIPETSLSVPLIGKYLIFVMSMTTLIVTNCIIVLNYSLRS 337

  Fly   333 PQTHTMAPWVRTVFINQLPRFLVM--------RRPLYPISEMIKSSRRLMVR 376
            |.||.|:..::.:|:..:||:|.|        :..:|.:.|..:||..||.|
Zfish   338 PSTHNMSQSIKHIFLEVVPRYLGMAPFVDEGDQGGVYEMRERRRSSFGLMQR 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 82/219 (37%)
Cys-loop 150..164 CDD:349832 8/13 (62%)
LGIC_TM_nAChR 242..>331 CDD:349866 40/89 (45%)
TM1 helix 242..266 CDD:349866 11/23 (48%)
TM2 helix 274..295 CDD:349866 9/20 (45%)
TM3 helix 306..328 CDD:349866 6/21 (29%)
Neur_chan_memb <683..760 CDD:460753
chrneNP_001314812.1 LGIC_ECD_nAChR_G 52..245 CDD:349830 74/193 (38%)
Cys-loop 153..167 CDD:349830 8/13 (62%)
Neur_chan_memb 252..494 CDD:460753 54/138 (39%)
Blue background indicates that the domain is not in the aligned region.

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