DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and pHCl-2

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster


Alignment Length:511 Identity:107/511 - (20%)
Similarity:187/511 - (36%) Gaps:115/511 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 TIDMILVLSFIS-SSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDV-NLKN 69
            |:.:.:::|::. ||.|......|..:|.:|.:.:|.| :|.|||.:|.|.|..|.:.:. :|||
  Fly     3 TLGIFVLISYLGLSSAAGVHLGDLQQNLAANGSVVVSP-LNTTDAFSVSINLSQSTVNNCPSLKN 66

  Fly    70 -------QIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNAD-GNFEVTL 126
                   :::|.  ......||   :..|......:...||.|...|..|.:..|.| .:.:.|:
  Fly    67 AESMALMELLTR--LTAPCRYD---RMVPPVVHNKDGEEVPMDIYARFYIYVMKNLDSSDLQFTV 126

  Fly   127 ATKATLNY------------------TGRVE-----WRP---------------------PAIYK 147
            .....|.|                  .|..|     |.|                     .:||.
  Fly   127 QGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELTSIYP 191

  Fly   148 SS-------------CEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLS 199
            :.             |.::.:.||||||.|.....||.|:...|.| |.:..|       .|...
  Fly   192 NGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQL-HWETDN-------PVSFD 248

  Fly   200 EFYTSVEWDIL-----EVPAVRNEKF--YTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISF 257
            :.....|::::     |...|.||.:  :...:..|..|:|.:.:.|:..:|.::..:|.:.|..
  Fly   249 KQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLPSIMIVT 313

  Fly   258 LTILVFYLPSD-SGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICV 321
            ::.:.|:|.:| :..:.:|..:.|||.....|.....:...|.|......|::.|:.:  |...|
  Fly   314 ISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFI--FGSLV 376

  Fly   322 TVLVLNIHFR-----SPQTHTMAPWVRTVFINQLPRFLVMRRPLY--PISEMIKSSRRLMVRTCN 379
            ....:|..:|     ..:..|....|::.|:..|.:.   ||..|  ..|.|...|...|.:||.
  Fly   377 EFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKH---RRHGYRRTDSTMSTMSTTSMDKTCG 438

  Fly   380 GLELRDQIPPLPPPV-----------ALSRMHHSPKTTSRSTSPHLQHRVQTYNLM 424
            .   .:.:..:..|:           |:|.......:||.|:....:...||:..|
  Fly   439 P---NNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSKEKPAQTFATM 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 61/287 (21%)
Neur_chan_memb 248..>359 CDD:280999 23/116 (20%)
Neur_chan_memb <683..760 CDD:280999
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 94/467 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447270
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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