DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and GluClalpha

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length:344 Identity:76/344 - (22%)
Similarity:151/344 - (43%) Gaps:78/344 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SFISSSTAN-------PDAKRLYDDLL--SNYNKLVRPV-VNVTDA-LTVRIKL---KLSQLIDV 65
            |..|:|.||       ...|::.|.:|  ..|:..:||. :|.||. ..||:.:   .:|::.||
  Fly    15 SLCSASLANNAKINFREKEKKVLDQILGAGKYDARIRPSGINGTDGPAVVRVNIFVRSISKIDDV 79

  Fly    66 NLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHV-PSDHIWRPDIVLYNNADGNFE------ 123
            .::..:..|   ..:.|.|.:||::..: |.::.|.: .::.:|.||:...|..:|:|.      
  Fly    80 TMEYSVQLT---FREQWTDERLKFDDIQ-GRLKYLTLTEANRVWMPDLFFSNEKEGHFHNIIMPN 140

  Fly   124 --VTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGS--WTYDGFQVDLRHI- 183
              :.:....::.|:.|:.      ...:|.::::.:|.|.|.|.::..|  ||.:    ||..: 
  Fly   141 VYIRIFPNGSVLYSIRIS------LTLACPMNLKLYPLDRQICSLRMASYGWTTN----DLVFLW 195

  Fly   184 DELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNEKFYT-CCDE-----PYLDITFNITMRRKTL 242
            .|.:...||:               .|.:|....|||.| .|:.     .|..:..::..:|:..
  Fly   196 KEGDPVQVVK---------------NLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFS 245

  Fly   243 FYTVNLIIPCMGISFLTILVFYLPSDSG---EKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLL 304
            :|.:.:.|||..:..::.:.|:|  |.|   .:|||.::.||::......:...:||.|      
  Fly   246 YYLIQIYIPCCMLVIVSWVSFWL--DQGAVPARVSLGVTTLLTMATQTSGINASLPPVS------ 302

  Fly   305 GKFVLFTMILDTFS-ICVT 322
                 :|..:|.:: :|:|
  Fly   303 -----YTKAIDVWTGVCLT 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 51/242 (21%)
Cys-loop 150..164 CDD:349832 4/13 (31%)
LGIC_TM_nAChR 242..>331 CDD:349866 20/85 (24%)
TM1 helix 242..266 CDD:349866 5/23 (22%)
TM2 helix 274..295 CDD:349866 4/20 (20%)
TM3 helix 306..328 CDD:349866 4/18 (22%)
Neur_chan_memb <683..760 CDD:460753
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 76/344 (22%)
Blue background indicates that the domain is not in the aligned region.

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