DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and Grd

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster


Alignment Length:379 Identity:83/379 - (21%)
Similarity:142/379 - (37%) Gaps:86/379 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SFISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVE 79
            |:::.|..:.:...|.|:||..|:..:||......| |:.:.:.:..:..::..:...:.:.:..
  Fly    98 SWLTQSNNHANISELLDNLLRGYDNSIRPDFGGPPA-TIEVDIMVRSMGPISEVDMTYSMDCYFR 161

  Fly    80 QSWYDYKLKWEPKEYG---GVEMLHVPSDHIWRPDIVLYNNADGNFE-VTLATKATLNY-TGRVE 139
            |||.|.:|.:|..:..   .|.||    ..||:||...||....... :|...|....| .|||.
  Fly   162 QSWVDKRLAFEGAQDTLALSVSML----ARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVL 222

  Fly   140 WRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEF--- 201
            :......|:.|.:::..||.|.|.|.:||||:.|....|..|...|.....:.| .:.||:|   
  Fly   223 YSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAE-DMKLSQFDLV 286

  Fly   202 -----------Y--------------------TSVEWDILEVPAVRNE------------KFYTC 223
                       |                    ||........||.:|:            .|.|.
  Fly   287 DCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTG 351

  Fly   224 CD----------------------EPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLP 266
            .|                      ..|..:..|..::|....:.:.:..||..:..|:.:.|:|.
  Fly   352 RDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLN 416

  Fly   267 SD-SGEKVSLSISILLSLTVFFLLLAEIIP----PTSL--VVPLLGKFVLFTMI 313
            .: :.::|||.|:.:|::|...|.....:|    ||:|  .|.|...|:..|::
  Fly   417 REATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATIL 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 61/290 (21%)
Cys-loop 150..164 CDD:349832 5/13 (38%)
LGIC_TM_nAChR 242..>331 CDD:349866 20/79 (25%)
TM1 helix 242..266 CDD:349866 4/23 (17%)
TM2 helix 274..295 CDD:349866 6/20 (30%)
TM3 helix 306..328 CDD:349866 2/8 (25%)
Neur_chan_memb <683..760 CDD:460753
GrdNP_524131.1 LIC 111..670 CDD:455710 81/366 (22%)
LGIC_ECD_GABAR_GRD-like 132..300 CDD:349808 43/173 (25%)
Cys-loop 233..247 CDD:349808 5/13 (38%)
Blue background indicates that the domain is not in the aligned region.

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