DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and Rdl

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:636 Identity:125/636 - (19%)
Similarity:229/636 - (36%) Gaps:166/636 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VTIDMILVLSFISSSTANPDAKRLY---------------------DDLLSNYNKLVRPVVN--- 46
            :||.:.:.::.|:..|.:   ||::                     |....:|:|.|||...   
  Fly    21 LTIWLAINMALIAQETGH---KRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYGGPP 82

  Fly    47 VTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSD---HIW 108
            |...:|:.: |.:|.|.:|.:.   .|.:.:..|.|.|.:|.:..:.  |||.|.|.|:   :||
  Fly    83 VEVGVTMYV-LSISSLSEVKMD---FTLDFYFRQFWTDPRLAYRKRP--GVETLSVGSEFIKNIW 141

  Fly   109 RPDIVLYNNADGNFEVTLATK--ATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSW 171
            .||....|.....|.:...:.  ..::::|.:.........:||.::::|||.|.|.|.::..|:
  Fly   142 VPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 206

  Fly   172 TYDGFQVDLRHI--DELNGTNVVEVGVDLSEFYTSVEWDILEVPAVR--------NEKFYTCCDE 226
            .|.  ..|:|:.  |.|:     .||:. ||         :|:|..|        .|...|..: 
  Fly   207 GYT--MRDIRYFWRDGLS-----SVGMS-SE---------VELPQFRVLGHRQRATEINLTTGN- 253

  Fly   227 PYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSD-SGEKVSLSISILLSLTVFFLLL 290
             |..:...|...|...:|.:.:.||...|..::.:.|:|..: :..:|:|.::.:|::|.     
  Fly   254 -YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTT----- 312

  Fly   291 AEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLV 355
              ::..|:..:|.:.......:.|.|..:.|                .|..:....:..:.:.:.
  Fly   313 --LMSSTNAALPKISYVKSIDVYLGTCFVMV----------------FASLLEYATVGYMAKRIQ 359

  Fly   356 MRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLP-----PPVALSRMHHSPKTTSRSTSPHLQ 415
            ||:..:...:.|...::..:...|    :.|..|.|     .|..:......|.......:    
  Fly   360 MRKQRFMAIQKIAEQKKQQLDGAN----QQQANPNPNANVGGPGGVGVGPGGPGGPGGGVN---- 416

  Fly   416 HRVQTYNLMDECGMGMGGGASTITGH----LSSLYP--PTMSTAN--------QQTSTT--SSLI 464
                       .|:|||.|.....||    .|..:|  |..:.:|        ||...|  .|::
  Fly   417 -----------VGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIV 470

  Fly   465 DAQY-------HNQYQQTGGSLLDHPLTPTKFRQMTSTSSQTGQNGS--GNGNGNGGYGGHGQSG 520
            ...:       |:....:.|..|::.:...:.... |.....||.|.  |.|.|.||.||..:.|
  Fly   471 GPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQ-SHGPGPGQGGGPPGGGGGGGGGGGPPEGG 534

  Fly   521 GHHLYRQQSSCSANFSPLPQHAHQAHASTTTSDLGMANPNVIKSTTTVNSV 571
            |.                |:.|..||         :.:|..:|....:|.:
  Fly   535 GD----------------PEAAVPAH---------LLHPGKVKKVKDINKL 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 58/253 (23%)
Neur_chan_memb 248..>359 CDD:280999 17/111 (15%)
Neur_chan_memb <683..760 CDD:280999
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 49/207 (24%)
Neur_chan_memb 274..588 CDD:397193 62/355 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447340
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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