Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261617.1 | Gene: | Rdl / 39054 | FlyBaseID: | FBgn0004244 | Length: | 608 | Species: | Drosophila melanogaster |
Alignment Length: | 636 | Identity: | 125/636 - (19%) |
---|---|---|---|
Similarity: | 229/636 - (36%) | Gaps: | 166/636 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 VTIDMILVLSFISSSTANPDAKRLY---------------------DDLLSNYNKLVRPVVN--- 46
Fly 47 VTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSD---HIW 108
Fly 109 RPDIVLYNNADGNFEVTLATK--ATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSW 171
Fly 172 TYDGFQVDLRHI--DELNGTNVVEVGVDLSEFYTSVEWDILEVPAVR--------NEKFYTCCDE 226
Fly 227 PYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSD-SGEKVSLSISILLSLTVFFLLL 290
Fly 291 AEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLV 355
Fly 356 MRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLP-----PPVALSRMHHSPKTTSRSTSPHLQ 415
Fly 416 HRVQTYNLMDECGMGMGGGASTITGH----LSSLYP--PTMSTAN--------QQTSTT--SSLI 464
Fly 465 DAQY-------HNQYQQTGGSLLDHPLTPTKFRQMTSTSSQTGQNGS--GNGNGNGGYGGHGQSG 520
Fly 521 GHHLYRQQSSCSANFSPLPQHAHQAHASTTTSDLGMANPNVIKSTTTVNSV 571 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 58/253 (23%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 17/111 (15%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
Rdl | NP_001261617.1 | LGIC_ECD_GABAR_RDL-like | 83..266 | CDD:349809 | 49/207 (24%) |
Neur_chan_memb | 274..588 | CDD:397193 | 62/355 (17%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45447340 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR18945 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.030 |