DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and lgc-28

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_001022053.1 Gene:lgc-28 / 3565225 WormBaseID:WBGene00044301 Length:397 Species:Caenorhabditis elegans


Alignment Length:387 Identity:66/387 - (17%)
Similarity:140/387 - (36%) Gaps:92/387 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 DAKRLYDDLL----SNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDY 85
            |..:.:||.:    ..|.:|: |:::|            ..:.|:..:..::...|....:|.|.
 Worm    39 DITKRFDDTMPIKKDGYLQLI-PLLHV------------DHIHDIQDEQGVLKMALTFTFTWMDE 90

  Fly    86 KLKWEPKEYGGVEMLHVPSDHIWR-----PDIVLYNNADG----------NFEVTLATKATLNYT 135
            :|.|.|..|.|:.........:||     |.:::.:..:.          :.::.:::...:..:
 Worm    91 RLMWNPSNYSGIRTFSTTRHEMWRKKFWTPTLMMTDVPNSRRPSDVFKPFDMDIYISSSGMVRTS 155

  Fly   136 GRVEWRPPAIYKSSCEIDVEYFPFDEQTCV-----------MKFGSWTYDGFQVDLRHIDELNGT 189
            .|:....|      |......:|.|.:.|.           .:|..|   |.....|::.....|
 Worm   156 ARMMLTIP------CRTGFGSYPNDYKNCTFTLMSPYYADQFRFAQW---GGAEFTRYLMSSRVT 211

  Fly   190 NVVE---VGVDLSEFY----TSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVN 247
            :|::   :.:|...:|    :.|..|..:........||          .:|:.::|...|.:|.
 Worm   212 DVLDFQLINIDTRNYYMFLGSEVVDDFSKFKPRHCRSFY----------RYNLVLKRVNKFVSVQ 266

  Fly   248 LIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTM 312
            ||.|...|:....:..:||...|  :..:.|.|:..|:|...:.:::|.....:|::...:.|  
 Worm   267 LIAPISVIAVFLAISGFLPHFYG--LVCAGSALVYETIFTYDVEQVLPKDYSGMPMIAILLCF-- 327

  Fly   313 ILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLVMRRPLYPISEMIKSSRRLM 374
               .|:..:.:|...:...:.::||    |.|.|            |.|...|:.....:|:
 Worm   328 ---LFAETIVLLAWKVFSINTRSHT----VFTAF------------PEYFDDEITSKKEKLL 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 39/254 (15%)
Cys-loop 150..164 CDD:349832 3/13 (23%)
LGIC_TM_nAChR 242..>331 CDD:349866 18/88 (20%)
TM1 helix 242..266 CDD:349866 6/23 (26%)
TM2 helix 274..295 CDD:349866 4/20 (20%)
TM3 helix 306..328 CDD:349866 3/21 (14%)
Neur_chan_memb <683..760 CDD:460753
lgc-28NP_001022053.1 LGIC_ECD 62..>187 CDD:475126 19/142 (13%)
LIC 67..>329 CDD:455710 48/287 (17%)
Blue background indicates that the domain is not in the aligned region.

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