DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and nAChRbeta3

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster


Alignment Length:333 Identity:97/333 - (29%)
Similarity:174/333 - (52%) Gaps:30/333 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QVTIDMILV-LSFISSSTANPDAK--------RLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLS 60
            |:.:.|:|: |:.:..:||..|.|        ||:..|.:||:..|:||...|.. .|.:::.::
  Fly    21 QMLMGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGTPT-NVSLEMVVT 84

  Fly    61 QLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVT 125
             .||::..|..:||:.|:...|.|.:..|:|.:|..:..:.:.|..:|.|.|.|:|..:|.  :.
  Fly    85 -YIDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGG--LM 146

  Fly   126 LATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTN 190
            ..|:.||::.|...|.|||:|.:.||:::..:|.|:|:|.:|.|||   |.:|.|..    |||.
  Fly   147 AETQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSW---GLKVVLPE----NGTA 204

  Fly   191 VVEVGVDLSEFYTSVEWDILEVPA-VRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMG 254
            ..| .:|..:...|.||:|::..| ..::.:|     .|::.|  :|.:|::..||..:..|...
  Fly   205 RGE-SLDHDDLVQSPEWEIVDSRAHFVSQDYY-----GYMEYT--LTAQRRSSMYTAVIYTPASC 261

  Fly   255 ISFLTILVFYLPSD-SGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFS 318
            |..|.:..|:||.. .|||:.::..:::.:..|.:..|:::|..|...||:..|...:::..:.|
  Fly   262 IVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVS 326

  Fly   319 ICVTVLVL 326
            ..|.||||
  Fly   327 TIVEVLVL 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 67/226 (30%)
Cys-loop 150..164 CDD:349832 5/13 (38%)
LGIC_TM_nAChR 242..>331 CDD:349866 24/86 (28%)
TM1 helix 242..266 CDD:349866 6/23 (26%)
TM2 helix 274..295 CDD:349866 2/20 (10%)
TM3 helix 306..328 CDD:349866 7/21 (33%)
Neur_chan_memb <683..760 CDD:460753
nAChRbeta3NP_525098.1 LIC 39..437 CDD:455710 92/315 (29%)
Blue background indicates that the domain is not in the aligned region.

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