DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and chrnb3b

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_775394.1 Gene:chrnb3b / 317643 ZFINID:ZDB-GENE-030102-4 Length:462 Species:Danio rerio


Alignment Length:427 Identity:195/427 - (45%)
Similarity:263/427 - (61%) Gaps:37/427 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VTIDMILVLSFISSSTANPDAKR----------LYDDLLSNYNKLVRPVVNVTDALTVRIKLKLS 60
            :|:.:|.:.:..:|..|...|:.          |..||...|.:.|||:::....:.||..||:|
Zfish     1 MTLTVIGLFTLFTSIFATTPAREFVSLAEREDALLRDLFQGYQRWVRPILHANHTVKVRFGLKIS 65

  Fly    61 QLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVT 125
            ||:||:.|||:||||:|:.:.|.||||:|.|:.|||:..:.|||:.||.||||||.||||.||.:
Zfish    66 QLVDVDEKNQLMTTNVWLYEEWLDYKLRWNPENYGGITFIRVPSESIWLPDIVLYENADGRFEGS 130

  Fly   126 LATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTN 190
            :.|||.:.|.|.:.|.|||.|||:|.:||.:||||.|.|.||||||||||..|:|         .
Zfish   131 IMTKAIVRYNGLITWTPPASYKSACTMDVTFFPFDRQNCSMKFGSWTYDGNMVEL---------V 186

  Fly   191 VVEVGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGI 255
            :|...||.|:|:.:.||:||.....:..:.......||  ||::..::|..||||:.|||||:|:
Zfish   187 LVNHQVDRSDFFDNGEWEILSATGHKGSRRDGHYSYPY--ITYSFILKRLPLFYTLFLIIPCLGL 249

  Fly   256 SFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSIC 320
            ||||:||||||||.|||||||.|:|:|||||.|::.||||.:|.|:||:|:::||.||..|.||.
Zfish   250 SFLTVLVFYLPSDEGEKVSLSTSVLVSLTVFLLVIEEIIPSSSKVIPLIGEYLLFIMIFVTLSII 314

  Fly   321 VTVLVLNIHFRSPQT-HTMAPWVRTVFINQLPRFLVMR----RPLYPISEMIKSSRRLMVRTCNG 380
            |||.|:|:|.||..| |.|:|||||:|:.:||..|.||    |..||  :|...|..|..|:..|
Zfish   315 VTVFVINVHHRSSATYHPMSPWVRTLFLQRLPDLLCMRGNTDRYHYP--QMEPQSPDLKPRSKKG 377

  Fly   381 LELRDQIPPLP--PPVALSRMHHSPKTTSRSTSPHLQ 415
                   ||.|  ...||..|......:.|..|.|::
Zfish   378 -------PPGPEGDGQALINMLEQATNSVRYISRHIK 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 99/224 (44%)
Neur_chan_memb 248..>359 CDD:280999 71/115 (62%)
Neur_chan_memb <683..760 CDD:280999
chrnb3bNP_775394.1 LIC 5..449 CDD:273305 194/423 (46%)
Neur_chan_LBD 31..235 CDD:280998 98/214 (46%)
Neur_chan_memb 242..446 CDD:280999 88/175 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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