DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and Chrna9

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_001074573.1 Gene:Chrna9 / 231252 MGIID:1202403 Length:479 Species:Mus musculus


Alignment Length:25 Identity:7/25 - (28%)
Similarity:14/25 - (56%) Gaps:4/25 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 VMLEKKRVIHSRVYMFNMIVSEIFM 49
            |::||...:.|    ||::...:|:
Mouse    42 VLIEKYGYLES----FNLVDGRLFI 62

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 7/25 (28%)
Cys-loop 150..164 CDD:349832
LGIC_TM_nAChR 242..>331 CDD:349866
TM1 helix 242..266 CDD:349866
TM2 helix 274..295 CDD:349866
TM3 helix 306..328 CDD:349866
Neur_chan_memb <683..760 CDD:460753
Chrna9NP_001074573.1 LIC 10..474 CDD:455710 7/25 (28%)
LGIC_ECD_nAChR_A9 31..237 CDD:349823 7/25 (28%)
Cys-loop 155..169 CDD:349823
Blue background indicates that the domain is not in the aligned region.

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