Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510029.3 | Gene: | lgc-18 / 187977 | WormBaseID: | WBGene00011360 | Length: | 399 | Species: | Caenorhabditis elegans |
Alignment Length: | 348 | Identity: | 82/348 - (23%) |
---|---|---|---|
Similarity: | 153/348 - (43%) | Gaps: | 85/348 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 28 RLYDDLLSNYNKLVRPVVNVTDA---------------LTVRI-KLKLSQLIDVNLKNQIMTTNL 76
Fly 77 WVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNAD-----------------GNFEV 124
Fly 125 TLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFG------------SWTYDGFQ 177
Fly 178 VDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILEVP-AVRNEKFYTCCDEPYLDITFNITMRRKT 241
Fly 242 LFYTVNLIIPCMGISFLTIL-VFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLG 305
Fly 306 KFVLFTMILDTFSICVTVLVLNI 328 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 61/258 (24%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 20/82 (24%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
lgc-18 | NP_510029.3 | LGIC_ECD_cation | 75..257 | CDD:349790 | 53/218 (24%) |
LGIC_TM_cation | 259..>341 | CDD:349853 | 20/82 (24%) | ||
TM1 helix | 263..284 | CDD:349853 | 7/20 (35%) | ||
TM2 helix | 292..313 | CDD:349853 | 2/20 (10%) | ||
TM3 helix | 323..341 | CDD:349853 | 1/17 (6%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |