DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha3 and lgc-17

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_510028.2 Gene:lgc-17 / 187976 WormBaseID:WBGene00011359 Length:401 Species:Caenorhabditis elegans


Alignment Length:333 Identity:74/333 - (22%)
Similarity:146/333 - (43%) Gaps:63/333 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DLLSNYNKLVRPV-------------VNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWY 83
            ||.:||:..:..|             ....|.....|.|...:|::|....:.::..|.:.:.||
 Worm    42 DLFANYDPTISSVYSSSFDYEPSHNHTRTVDRWNYTILLYYLKLVEVQEPEEKVSVVLELVEQWY 106

  Fly    84 DYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLY------NNADGNFEVTLATKATLNYTGRVEWRP 142
            |.:|.|....|..:..:.|..:.:|.|.:..:      :..|.:|.:     .:::..|.::...
 Worm   107 DPRLSWNSSLYSNIPTVFVRQEKVWSPTLSAFGVNEIIDFRDQDFRI-----VSIDDIGYIQDYL 166

  Fly   143 PAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSV-- 205
            .....|:|.:||..||||.|||.:.|....::..||.:                 |:|.|..:  
 Worm   167 SVRVSSNCPMDVSRFPFDSQTCQICFCLPIFNIRQVKI-----------------LNEIYEGILQ 214

  Fly   206 ----------EWDILEVP-AVRNEKFYTCCDEPY--LDI-TFNITMRRKTLFYTVNLIIPCMGIS 256
                      ||.::.:. .|...|:    |:.|  :|: .|.||:||..|:|...::.|...|:
 Worm   215 EKIIKTMGNSEWKVVSLTNRVEQLKY----DDDYGNMDLAVFEITIRRNPLYYIYMIVFPSFVIN 275

  Fly   257 FLTILVFYLPS-DSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSIC 320
            .::|:..:|.| |...|:::.::.::::|....::|:.||.|. .:||||.:::..:::...:|.
 Worm   276 GISIVGIFLKSADKMSKLNVGLTNIMTMTFILGVMADKIPRTG-SIPLLGIYIIINLLIMIIAIT 339

  Fly   321 VTVLVLNI 328
            |.||:..:
 Worm   340 VVVLITEL 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 52/245 (21%)
Cys-loop 150..164 CDD:349832 8/13 (62%)
LGIC_TM_nAChR 242..>331 CDD:349866 22/88 (25%)
TM1 helix 242..266 CDD:349866 5/23 (22%)
TM2 helix 274..295 CDD:349866 2/20 (10%)
TM3 helix 306..328 CDD:349866 4/21 (19%)
Neur_chan_memb <683..760 CDD:460753
lgc-17NP_510028.2 LGIC_ECD_cation 77..259 CDD:349790 45/207 (22%)
Cys-loop 174..188 CDD:349790 8/13 (62%)
LGIC_TM 261..>317 CDD:476813 13/55 (24%)
TM1 helix 265..286 CDD:349850 4/20 (20%)
TM2 helix 294..315 CDD:349850 2/20 (10%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.