DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and lgc-16

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_510027.2 Gene:lgc-16 / 187975 WormBaseID:WBGene00011358 Length:401 Species:Caenorhabditis elegans


Alignment Length:340 Identity:76/340 - (22%)
Similarity:151/340 - (44%) Gaps:67/340 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KRLYDDLLSNYNKLVRPVV-------------NVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWV 78
            :.|.:||.:||:..:..|.             ...|.....|.|...:|::|....:.::..|.:
 Worm    37 ENLTNDLFANYDPTISTVYADIADWEPLGDNPRTIDRWNYTILLYYLKLVEVQEPAEKVSVVLEL 101

  Fly    79 EQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRP--------DIVLYNNADGNFEVTLATKATLNYT 135
            .:.|||.:|.|....|..|..:....:.:|.|        :|:.:.:.|  |.:     .::::|
 Worm   102 VERWYDPRLSWNISLYSNVSTIFARQEKVWSPTLSPFGVNEIIDFRDQD--FRL-----ISIDFT 159

  Fly   136 GRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSE 200
            |.:.........::|.:||..||||.|||.::|....::..||.:                 |:|
 Worm   160 GYLNDYLSVRVSANCPMDVSRFPFDSQTCQIRFCLPIFNIRQVKI-----------------LNE 207

  Fly   201 FYTSV------------EWDILEVP-AVRNEKFYTCCDEPY--LDI-TFNITMRRKTLFYTVNLI 249
            .|..:            ||.::.:. .|...|:    |:.|  :|: .|.||:||..|:|...::
 Worm   208 IYEGILQEKIIKTMGNSEWKVVSLTNRVEQLKY----DDDYGNMDLAVFEITIRRNPLYYIYMIV 268

  Fly   250 IPCMGISFLTILVFYLPS-DSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMI 313
            .|...|:.::|:..:|.| |...|:::.::.::::|....::|:.||.|. .:||||.:::..::
 Worm   269 FPSFVINGISIVGIFLKSADKMSKLNVGLTNIMTMTFILGVMADKIPRTG-SIPLLGIYIIINLL 332

  Fly   314 LDTFSICVTVLVLNI 328
            :...:|.|.||:..:
 Worm   333 IMIIAITVVVLITEL 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 54/252 (21%)
Cys-loop 150..164 CDD:349832 8/13 (62%)
LGIC_TM_nAChR 242..>331 CDD:349866 22/88 (25%)
TM1 helix 242..266 CDD:349866 5/23 (22%)
TM2 helix 274..295 CDD:349866 2/20 (10%)
TM3 helix 306..328 CDD:349866 4/21 (19%)
Neur_chan_memb <683..760 CDD:460753
lgc-16NP_510027.2 LGIC_ECD_cation 77..259 CDD:349790 46/209 (22%)
Cys-loop 174..188 CDD:349790 8/13 (62%)
LGIC_TM 261..>317 CDD:476813 13/55 (24%)
TM1 helix 265..284 CDD:349850 3/18 (17%)
TM2 helix 291..315 CDD:349850 3/23 (13%)
Blue background indicates that the domain is not in the aligned region.

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