DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and lgc-15

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_510025.2 Gene:lgc-15 / 187973 WormBaseID:WBGene00011356 Length:399 Species:Caenorhabditis elegans


Alignment Length:405 Identity:92/405 - (22%)
Similarity:180/405 - (44%) Gaps:83/405 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 TIDMILVLSFISSSTANPD--AKRLYD----------DLLSNYNKLVRPV---VNVTDAL----- 51
            |...:..:|.:||...|..  ..:.||          :|.|.|:..:.||   |:.|..|     
 Worm     4 TATFLTYISHVSSIYYNHSLYVPKYYDFLETQTNLTKNLFSGYDATISPVYTKVDPTQPLGHDPD 68

  Fly    52 -----TVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPD 111
                 ...:.|...:|::|....:.::..:.|.:.|:|.:|.|..::|..:..::....::|.|.
 Worm    69 APGRWNYTLLLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWNKEDYDDIASIYTRQANVWSPT 133

  Fly   112 I------VLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 170
            :      .|.:..|.:|.:...|    :| |.|......:..::|.:||..||||.|||.::|..
 Worm   134 LSAFGVSELVDLRDTDFRLVGIT----SY-GMVNTYVSVLVSANCPMDVYKFPFDYQTCQIRFCI 193

  Fly   171 WTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSV---EWDILEVP-AVRNEKFYTCCDEPY--L 229
            ..:..::|::        .|.:..||..|..:.::   ||:::.:. .|...|:    |:.:  |
 Worm   194 PVFTSYEVEI--------FNEIYAGVLTSNAWKTMGNSEWNLVNLTHRVETLKY----DDGFANL 246

  Fly   230 DI-TFNITMRRKTLFYTVNLIIPCMGISFLTIL-VFYLPSDSGEKVSLSISILLSLTVFFLLLAE 292
            |: ||.|.:||..|:|...:|.|...|:.::|: ||...:|...|:::.::.::::|....::|:
 Worm   247 DLGTFEIKIRRNPLYYIYMIIFPSFIINVVSIIGVFLKGADKMSKLNVGLTNIMTMTFILGVMAD 311

  Fly   293 IIPPTSLVVPLLGKFVLFTMILDTFSI-CVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFL-- 354
            .||.|. .:||||.:::..:::...:| .|||                       ||:|.|..  
 Worm   312 KIPRTG-TIPLLGVYIITNLVIMLIAIGIVTV-----------------------INELRRCASP 352

  Fly   355 VMRRPLYPISEMIKS 369
            |::|....:|..::|
 Worm   353 VLKRKQTKLSRKLES 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 56/250 (22%)
Neur_chan_memb 248..>359 CDD:280999 26/114 (23%)
Neur_chan_memb <683..760 CDD:280999
lgc-15NP_510025.2 LGIC_ECD_cation 74..258 CDD:349790 45/200 (23%)
LGIC_TM_cation 260..>343 CDD:349853 23/106 (22%)
TM1 helix 264..285 CDD:349853 6/20 (30%)
TM2 helix 293..314 CDD:349853 2/20 (10%)
TM3 helix 324..343 CDD:349853 4/41 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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