Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510025.2 | Gene: | lgc-15 / 187973 | WormBaseID: | WBGene00011356 | Length: | 399 | Species: | Caenorhabditis elegans |
Alignment Length: | 405 | Identity: | 92/405 - (22%) |
---|---|---|---|
Similarity: | 180/405 - (44%) | Gaps: | 83/405 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 7 TIDMILVLSFISSSTANPD--AKRLYD----------DLLSNYNKLVRPV---VNVTDAL----- 51
Fly 52 -----TVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPD 111
Fly 112 I------VLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 170
Fly 171 WTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSV---EWDILEVP-AVRNEKFYTCCDEPY--L 229
Fly 230 DI-TFNITMRRKTLFYTVNLIIPCMGISFLTIL-VFYLPSDSGEKVSLSISILLSLTVFFLLLAE 292
Fly 293 IIPPTSLVVPLLGKFVLFTMILDTFSI-CVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFL-- 354
Fly 355 VMRRPLYPISEMIKS 369 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 56/250 (22%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 26/114 (23%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
lgc-15 | NP_510025.2 | LGIC_ECD_cation | 74..258 | CDD:349790 | 45/200 (23%) |
LGIC_TM_cation | 260..>343 | CDD:349853 | 23/106 (22%) | ||
TM1 helix | 264..285 | CDD:349853 | 6/20 (30%) | ||
TM2 helix | 293..314 | CDD:349853 | 2/20 (10%) | ||
TM3 helix | 324..343 | CDD:349853 | 4/41 (10%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |