| Sequence 1: | NP_525079.3 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_510023.2 | Gene: | lgc-13 / 187971 | WormBaseID: | WBGene00011354 | Length: | 399 | Species: | Caenorhabditis elegans |
| Alignment Length: | 353 | Identity: | 79/353 - (22%) |
|---|---|---|---|
| Similarity: | 149/353 - (42%) | Gaps: | 61/353 - (17%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 32 DLLSNYNKLVRPVV-------------NVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWY 83
Fly 84 DYKLKWEPKEYGGVEMLHVPSDHIWRPDIV------LYNNADGNFEVTLATKATLNY---TGRVE 139
Fly 140 WRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTS 204
Fly 205 VEWDILEVPAVRNEKFYTCCDEPYLDI-TFNITMRRKTLFYTVNLIIPCMGISFLTIL-VFYLPS 267
Fly 268 DSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSI-----------CV 321
Fly 322 TV----------LVLNIHFRSPQTHTMA 339 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| nAChRalpha3 | NP_525079.3 | LGIC_ECD_nAChR_proto_alpha-like | 25..243 | CDD:349832 | 51/233 (22%) |
| Cys-loop | 150..164 | CDD:349832 | 8/13 (62%) | ||
| LGIC_TM_nAChR | 242..>331 | CDD:349866 | 24/110 (22%) | ||
| TM1 helix | 242..266 | CDD:349866 | 7/24 (29%) | ||
| TM2 helix | 274..295 | CDD:349866 | 1/20 (5%) | ||
| TM3 helix | 306..328 | CDD:349866 | 6/42 (14%) | ||
| Neur_chan_memb | <683..760 | CDD:460753 | |||
| lgc-13 | NP_510023.2 | LGIC_ECD_cation | 74..257 | CDD:349790 | 42/197 (21%) |
| Cys-loop | 173..187 | CDD:349790 | 8/13 (62%) | ||
| LGIC_TM | 259..>335 | CDD:476813 | 17/76 (22%) | ||
| TM1 helix | 263..284 | CDD:349850 | 5/20 (25%) | ||
| TM2 helix | 292..313 | CDD:349850 | 1/20 (5%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||