Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510023.2 | Gene: | lgc-13 / 187971 | WormBaseID: | WBGene00011354 | Length: | 399 | Species: | Caenorhabditis elegans |
Alignment Length: | 353 | Identity: | 79/353 - (22%) |
---|---|---|---|
Similarity: | 149/353 - (42%) | Gaps: | 61/353 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 32 DLLSNYNKLVRPVV-------------NVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWY 83
Fly 84 DYKLKWEPKEYGGVEMLHVPSDHIWRPDIV------LYNNADGNFEVTLATKATLNY---TGRVE 139
Fly 140 WRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTS 204
Fly 205 VEWDILEVPAVRNEKFYTCCDEPYLDI-TFNITMRRKTLFYTVNLIIPCMGISFLTIL-VFYLPS 267
Fly 268 DSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSI-----------CV 321
Fly 322 TV----------LVLNIHFRSPQTHTMA 339 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 51/231 (22%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 26/114 (23%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
lgc-13 | NP_510023.2 | LGIC_ECD_cation | 74..257 | CDD:349790 | 42/197 (21%) |
LGIC_TM | 259..>335 | CDD:365787 | 17/76 (22%) | ||
TM1 helix | 259..284 | CDD:349850 | 7/24 (29%) | ||
TM2 helix | 292..313 | CDD:349850 | 1/20 (5%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |