DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and lgc-22

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_001255259.1 Gene:lgc-22 / 184533 WormBaseID:WBGene00017483 Length:445 Species:Caenorhabditis elegans


Alignment Length:341 Identity:74/341 - (21%)
Similarity:131/341 - (38%) Gaps:48/341 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 NVTDALTVRIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLKWEPKEYGGVEMLHVPSDHIW 108
            |.||..|..::::..::.:|.:..:.....::  ...||.|..:.|: ||..|:..|:.....||
 Worm    77 NATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVLSWNDTMVSWD-KEQWGLSWLNFYWIQIW 140

  Fly   109 RPDIVLYNNADGNFEVTLATKA-TLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWT 172
            .|:||..|....:....:.:|. ..||||::.......:.:......|.:|.|.|....||    
 Worm   141 TPNIVQINGGSTSNPGQVTSKVLAANYTGQIYLWSDFSFTTPFRFQYEDYPNDMQRVCYKF---- 201

  Fly   173 YDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAV------------RN--EKFYTC 223
             |..::...|.....|....|.......|.:.  |.|.:|..|            :|  |..||.
 Worm   202 -DDKRLMAVHFTVAEGVKNKEREATTDPFVSG--WKIEDVEVVSITHSPDNGGTGKNGLESPYTV 263

  Fly   224 CDEPYLDITFN------------ITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLS 276
              |...|...|            |::||..:::|..:::|.:..|..|:...:......:.:.|.
 Worm   264 --EQLSDPRRNPFDVQADNGELCISLRRNAVYFTAEMLLPALITSLFTLAAVFFQLSKTQPILLG 326

  Fly   277 ISI---LLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTM 338
            .|:   :|||    :|:::.:|..:...|.:.|:..|.|.. |..:.|..|||. ...:.|....
 Worm   327 FSVVAQILSL----ILVSQRLPSFTAHTPTILKYAGFNMTW-TAILFVISLVLE-RMATSQVDIP 385

  Fly   339 APWVRTVFINQLPRFL 354
            .|...:.|...:.:||
 Worm   386 PPHGVSTFAGLVNKFL 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 49/223 (22%)
Neur_chan_memb 248..>359 CDD:280999 24/110 (22%)
Neur_chan_memb <683..760 CDD:280999
lgc-22NP_001255259.1 ShKT 24..58 CDD:214586
LGIC_ECD 85..249 CDD:355788 35/171 (20%)
Cys-loop 183..198 CDD:349787 4/14 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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