Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001255259.1 | Gene: | lgc-22 / 184533 | WormBaseID: | WBGene00017483 | Length: | 445 | Species: | Caenorhabditis elegans |
Alignment Length: | 341 | Identity: | 74/341 - (21%) |
---|---|---|---|
Similarity: | 131/341 - (38%) | Gaps: | 48/341 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 46 NVTDALTVRIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLKWEPKEYGGVEMLHVPSDHIW 108
Fly 109 RPDIVLYNNADGNFEVTLATKA-TLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWT 172
Fly 173 YDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAV------------RN--EKFYTC 223
Fly 224 CDEPYLDITFN------------ITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLS 276
Fly 277 ISI---LLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTM 338
Fly 339 APWVRTVFINQLPRFL 354 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 49/223 (22%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 24/110 (22%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
lgc-22 | NP_001255259.1 | ShKT | 24..58 | CDD:214586 | |
LGIC_ECD | 85..249 | CDD:355788 | 35/171 (20%) | ||
Cys-loop | 183..198 | CDD:349787 | 4/14 (29%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |