DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and lgc-23

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_510016.2 Gene:lgc-23 / 182622 WormBaseID:WBGene00007594 Length:403 Species:Caenorhabditis elegans


Alignment Length:355 Identity:82/355 - (23%)
Similarity:142/355 - (40%) Gaps:67/355 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 MILVLSF----ISSSTANPDAKR--LYDDLLSNYNKLVRPVVNVTDA-------LTVRIKLKLSQ 61
            ||||| |    |..|.|:.:::|  .|.|    :.||...|:...|.       :.:..:|||..
 Worm     6 MILVL-FNTIPIRVSEADEESERHQAYLD----HRKLKEDVLGPLDGSMPSELPVFIGAQLKLDH 65

  Fly    62 LIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGG-----VEMLHVPSDHIWRPDIVLYNNADGN 121
            :..|:.|...:|..|.|:..|.|.:|:|:|..|.|     :|.:......||:|.|.:.|..:..
 Worm    66 ISRVDEKTGFLTLALTVKFMWSDERLQWDPSHYSGFTRTRLEFVDFWLYQIWKPRIYMTNTYERR 130

  Fly   122 FEVTL------ATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDL 180
            ...|:      ..:..::..|.|......:.|:.|.:|.:.:|.|.|.|...|            
 Worm   131 QSKTIDLLSNTLVEMDIHSKGFVMTTTKILLKTFCFLDFKGYPHDFQNCSFSF------------ 183

  Fly   181 RHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRN--------EKFYTCCDEPYL-DIT---- 232
              |..:|..::......|...:|....|..:|..|::        |..|...:...| |:|    
 Worm   184 --IPNMNANDIFLGSSMLKAKFTKDFTDPQQVVRVQDFQINDVVTEDLYLFMNRIVLHDLTREPR 246

  Fly   233 --------FNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLL 289
                    |.|.::||.::..:.|..|.:.|....|:..:|||:..  :.|.:..|:|..::|..
 Worm   247 SLVRSFVSFTIVLQRKNVYVHLQLYAPMIFICTCLIISGFLPSEYA--LPLLVFNLISEYLYFHN 309

  Fly   290 LAEIIPPTSLVVPLLGKFVLFTMILDTFSI 319
            :.:::|......|.:.....|| :.:|.||
 Worm   310 IKDVLPTDFDGTPTIALIATFT-LAETMSI 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 55/258 (21%)
Cys-loop 150..164 CDD:349832 5/13 (38%)
LGIC_TM_nAChR 242..>331 CDD:349866 18/78 (23%)
TM1 helix 242..266 CDD:349866 4/23 (17%)
TM2 helix 274..295 CDD:349866 4/20 (20%)
TM3 helix 306..328 CDD:349866 5/14 (36%)
Neur_chan_memb <683..760 CDD:460753
lgc-23NP_510016.2 Neur_chan_LBD 34..262 CDD:460752 50/241 (21%)
Blue background indicates that the domain is not in the aligned region.

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