Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_503167.1 | Gene: | lgc-26 / 178554 | WormBaseID: | WBGene00021981 | Length: | 486 | Species: | Caenorhabditis elegans |
Alignment Length: | 439 | Identity: | 97/439 - (22%) |
---|---|---|---|
Similarity: | 181/439 - (41%) | Gaps: | 77/439 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 VTIDMILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQ 70
Fly 71 IMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGN-FEVTLATKATLNY 134
Fly 135 -TGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLR---------------HI 183
Fly 184 DELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNEKFY---TCCD-EP-------YLDITFNITM 237
Fly 238 RRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVP 302
Fly 303 LLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLVMRRPL------- 360
Fly 361 YPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMHHSPKTTSRS 409 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 62/242 (26%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 17/110 (15%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
lgc-26 | NP_503167.1 | LGIC_ECD_cation | 52..256 | CDD:349790 | 52/216 (24%) |
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |