DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and lgc-26

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_503167.1 Gene:lgc-26 / 178554 WormBaseID:WBGene00021981 Length:486 Species:Caenorhabditis elegans


Alignment Length:439 Identity:97/439 - (22%)
Similarity:181/439 - (41%) Gaps:77/439 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VTIDMILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQ 70
            ::|.:::...|.::::.:.|.::|...||..||..||||...:....|.:.|.::.:..|:...|
 Worm     7 ISIGVLINFHFGNAASQSTDERKLEAQLLKGYNSKVRPVKVESTVTQVAVYLNIAHVEKVDEHEQ 71

  Fly    71 IMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGN-FEVTLATKATLNY 134
            ....:..:..||.|..||||.|. ..:..|.:.|..:|:|.:.|||:|.|| :.:.|.....:.|
 Worm    72 TALVHGHLMASWTDEYLKWERKA-TNISTLSIASSKLWQPALQLYNSARGNSWSLYLTGLPAIVY 135

  Fly   135 -TGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLR---------------HI 183
             ||:|..|....:..:|:.|...:|:|:|:|.:....|.|...||:|.               ..
 Worm   136 NTGKVWSRGTFSFFVTCQFDFTNWPYDQQSCPIVITDWVYGLGQVNLSDPATAAGYGKPTIRLSY 200

  Fly   184 DELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNEKFY---TCCD-EP-------YLDITFNITM 237
            |.::.||...||          .|::::  :.:...::   .|.| ||       :..:.|.||:
 Worm   201 DPIDETNKRHVG----------GWEVID--SWKKHCYWGPKGCLDAEPDGNPDWYWSLLEFGITL 253

  Fly   238 RRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVP 302
            :|...::::.:::|.:..|.:.:|.|::.:.......::::|.|..|....:|:. :||.|...|
 Worm   254 KRHLPYFSLTIVMPMVSTSLMILLGFWIENFDFNVFLITLNIALQATYGSNILSR-MPPGSGRTP 317

  Fly   303 LLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLVMRRPL------- 360
            .:.......:::..|.:.:.|                          :..||.:|.|.       
 Worm   318 KIVHLYSIGLLISAFQVVLIV--------------------------MSNFLRVRLPSHYEFDFG 356

  Fly   361 YPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMHHSPKTTSRS 409
            |.|:|:.|........|..||....|  .|..|..|:......|..|.|
 Worm   357 YDITEIPKKFGLTRFFTTKGLSFDPQ--ELLNPAQLTSEAEIQKEASTS 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 62/242 (26%)
Neur_chan_memb 248..>359 CDD:280999 17/110 (15%)
Neur_chan_memb <683..760 CDD:280999
lgc-26NP_503167.1 LGIC_ECD_cation 52..256 CDD:349790 52/216 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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