Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_496423.1 | Gene: | lgc-20 / 174733 | WormBaseID: | WBGene00007191 | Length: | 454 | Species: | Caenorhabditis elegans |
Alignment Length: | 343 | Identity: | 64/343 - (18%) |
---|---|---|---|
Similarity: | 141/343 - (41%) | Gaps: | 69/343 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 48 TDALTVRIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLKWEPK-EYGGVEMLHV-PSDHIW 108
Fly 109 RPDIVLYNNADGNFEVTLATKATLNYT-------------GRVEWRPPAIYKSSCEIDVEYFPFD 160
Fly 161 EQTCVMKFGSWTYDGFQVDL----RHIDELN----GTNVVEVGVDLSEFYTS-VEWDILE----- 211
Fly 212 --VPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLP--SDSGEK 272
Fly 273 VSLSISILLSLTVFFLLLAEIIPPTSL--VVPLLGKFVLFTMILDTFSICVTVLVL---NIHFRS 332
Fly 333 PQTHTMAPWVRTVFINQL 350 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 39/225 (17%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 24/110 (22%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
lgc-20 | NP_496423.1 | LGIC_ECD | 68..>206 | CDD:355788 | 31/151 (21%) |
Cys-loop | 170..184 | CDD:349787 | 4/13 (31%) | ||
DUF2070 | 274..>365 | CDD:391572 | 21/93 (23%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |