DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha3 and acr-7

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_495647.1 Gene:acr-7 / 174262 WormBaseID:WBGene00000046 Length:538 Species:Caenorhabditis elegans


Alignment Length:388 Identity:153/388 - (39%)
Similarity:231/388 - (59%) Gaps:14/388 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VTIDMILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQ 70
            |.:..::|.:..:...:..:| :||.|||:||:.|||||.|...||||.:|:.:.|::.|:.|:|
 Worm    12 VALFFLIVFNGFTVEGSKKEA-QLYRDLLTNYSYLVRPVRNPKKALTVTMKVFIQQVLLVDAKHQ 75

  Fly    71 IMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVP-SDHIWRPDIVLYN----NADGNFEVTLATKA 130
            ::..|.|::..|.|::|:|.|.:|..:..:... .|.||:|||:|||    :...:|::|..|.|
 Worm    76 MIEVNAWLKYIWTDFRLRWNPLDYENITSVRFQGEDQIWQPDILLYNRYIEDEQESFDITYKTNA 140

  Fly   131 TLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVG 195
            .....|.:.|.||.|:|.||::|:..||||||.|.||||||||.||.:||| :|.:.|.   |..
 Worm   141 VAYSDGVINWIPPGIFKLSCKMDITLFPFDEQICFMKFGSWTYHGFALDLR-LDVVKGQ---EPS 201

  Fly   196 VDLSEFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTI 260
            .|||.:.|:.||.:|..||.|.||||.||.|||..:.|.:.:||:|.:|..|:::|.:.:||:::
 Worm   202 ADLSTYITNGEWHLLSAPARREEKFYKCCKEPYPTVKFYLHLRRRTFYYVFNVVLPTLLVSFMSL 266

  Fly   261 LVFYLP-SDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVL 324
            |.|.|| :|..||:.|..:||||:..|..:|:|:.|.||..|||||.|......:...|...|:|
 Worm   267 LAFCLPATDLSEKIGLQTTILLSVCFFLTILSEMTPTTSEAVPLLGVFFSALTFIVAMSTTFTIL 331

  Fly   325 VLNIHFRSPQTHTMAPWVRTVFINQLPRFLVMRRPLYPI---SEMIKSSRRLMVRTCNGLELR 384
            ||||.:|....|.::|..|::|:..||..::|:||.:..   |....||....|:.....||:
 Worm   332 VLNIRYRQITNHYLSPMFRSIFLECLPWLMMMKRPDHKFRRGSSYRDSSADQCVQCAKNAELK 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 99/222 (45%)
Cys-loop 150..164 CDD:349832 8/13 (62%)
LGIC_TM_nAChR 242..>331 CDD:349866 36/89 (40%)
TM1 helix 242..266 CDD:349866 7/23 (30%)
TM2 helix 274..295 CDD:349866 8/20 (40%)
TM3 helix 306..328 CDD:349866 6/21 (29%)
Neur_chan_memb <683..760 CDD:460753
acr-7NP_495647.1 LIC 28..524 CDD:455710 151/372 (41%)
LGIC_ECD_nAChR 56..246 CDD:349798 82/193 (42%)
Cys-loop 160..174 CDD:349798 8/13 (62%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.