Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_598281.1 | Gene: | Chrnb3 / 171131 | RGDID: | 621544 | Length: | 464 | Species: | Rattus norvegicus |
Alignment Length: | 348 | Identity: | 183/348 - (52%) |
---|---|---|---|
Similarity: | 242/348 - (69%) | Gaps: | 20/348 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 17 ISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQS 81
Fly 82 WYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIY 146
Fly 147 KSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILE 211
Fly 212 VPAV---RNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKV 273
Fly 274 SLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQT-HT 337
Fly 338 MAPWVRTVFINQLPRFLVMRRPL 360 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 106/217 (49%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 69/111 (62%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
Chrnb3 | NP_598281.1 | LIC | 29..455 | CDD:273305 | 183/347 (53%) |
Neur_chan_LBD | 35..239 | CDD:280998 | 107/219 (49%) | ||
Neur_chan_memb | 246..452 | CDD:280999 | 70/114 (61%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 253 | 1.000 | Domainoid score | I1995 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm12327 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 5.820 |