DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and Chrnb3

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_598281.1 Gene:Chrnb3 / 171131 RGDID:621544 Length:464 Species:Rattus norvegicus


Alignment Length:348 Identity:183/348 - (52%)
Similarity:242/348 - (69%) Gaps:20/348 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQS 81
            :||...:.||  |...|...|.|.||||:|.:|.:.|...||:|||:||:.|||:||||:|::|.
  Rat    28 LSSVAEHEDA--LLRHLFQGYQKWVRPVLNSSDIIKVYFGLKISQLVDVDEKNQLMTTNVWLKQE 90

  Fly    82 WYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIY 146
            |.|.||:|.|:||||:..:.|||:.:|.|||||:.||||.||.:|.|||.:..:|.|.|.|||.|
  Rat    91 WTDQKLRWNPEEYGGINSIKVPSESLWLPDIVLFENADGRFEGSLMTKAIVKSSGTVSWTPPASY 155

  Fly   147 KSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILE 211
            ||||.:||.:||||.|.|.||||||||||..|||..|:|         .||..:|:.:.||:||.
  Rat   156 KSSCTMDVTFFPFDRQNCSMKFGSWTYDGTMVDLILINE---------NVDRKDFFDNGEWEILN 211

  Fly   212 VPAV---RNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKV 273
            ...:   |.|.||:     |..:|::..:||..||||:.|||||:|:||||:||||||||.|||:
  Rat   212 AKGMKGNRREGFYS-----YPFVTYSFVLRRLPLFYTLFLIIPCLGLSFLTVLVFYLPSDEGEKL 271

  Fly   274 SLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQT-HT 337
            |||.|:|:|||||.|::.||||.:|.|:||:|:::||.||..|.||.|||.|:|:|.||..| |.
  Rat   272 SLSTSVLVSLTVFLLVIEEIIPSSSKVIPLIGEYLLFIMIFVTLSIIVTVFVINVHHRSSSTYHP 336

  Fly   338 MAPWVRTVFINQLPRFLVMRRPL 360
            |||||:.:|:.:|||:|.|:.|:
  Rat   337 MAPWVKRLFLQRLPRWLCMKDPM 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 106/217 (49%)
Neur_chan_memb 248..>359 CDD:280999 69/111 (62%)
Neur_chan_memb <683..760 CDD:280999
Chrnb3NP_598281.1 LIC 29..455 CDD:273305 183/347 (53%)
Neur_chan_LBD 35..239 CDD:280998 107/219 (49%)
Neur_chan_memb 246..452 CDD:280999 70/114 (61%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 253 1.000 Domainoid score I1995
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm12327
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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