Sequence 1: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_038589.2 | Gene: | Htr3a / 15561 | MGIID: | 96282 | Length: | 489 | Species: | Mus musculus |
Alignment Length: | 441 | Identity: | 126/441 - (28%) |
---|---|---|---|
Similarity: | 211/441 - (47%) | Gaps: | 75/441 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 QVTIDMILVLSFISSSTA----------------NPDAKRLYDDLLSNYNKLVRPVVNVTDALTV 53
Fly 54 RIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNA 118
Fly 119 DGNFEVTLATKATLNYT-----GRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQV 178
Fly 179 DLRHIDELNGT---NVVEVGVDLSEFYTSVEWDILEV-PAVRNEKFYTCCDEPYLDITFNITMRR 239
Fly 240 KTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLL 304
Fly 305 GKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLVM------RRPLYPI 363
Fly 364 SEMIKSSRRLMVRTCNGLEL---------------------RDQIPPLPPP 393 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 74/223 (33%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 29/116 (25%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
Htr3a | NP_038589.2 | LIC | 5..483 | CDD:273305 | 126/438 (29%) |
HA-stretch | 425..461 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |