DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and Htr3a

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_038589.2 Gene:Htr3a / 15561 MGIID:96282 Length:489 Species:Mus musculus


Alignment Length:441 Identity:126/441 - (28%)
Similarity:211/441 - (47%) Gaps:75/441 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QVTIDMILVLSFISSSTA----------------NPDAKRLYDDLLSNYNKLVRPVVNVTDALTV 53
            ::.|..:|:..|:|..||                .|...||.|.||:||.|.||||.:.....||
Mouse     2 RLCIPQVLLALFLSMLTAPGEGSRRRATQARDTTQPALLRLSDHLLANYKKGVRPVRDWRKPTTV 66

  Fly    54 RIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNA 118
            .|.:.:..:::|:.|||::||.:|..|.|.|..|:|.|:::..|..|.:|:|.||.|||::    
Mouse    67 SIDVIMYAILNVDEKNQVLTTYIWYRQYWTDEFLQWTPEDFDNVTKLSIPTDSIWVPDILI---- 127

  Fly   119 DGNFEVTLATKATLNYT-----GRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQV 178
              |..|.:.....:.|.     |.|:...|....::|.:|:..||||.|.|.:.|.||       
Mouse   128 --NEFVDVGKSPNIPYVYVHHRGEVQNYKPLQLVTACSLDIYNFPFDVQNCSLTFTSW------- 183

  Fly   179 DLRHIDELNGT---NVVEVGVDLSEFYTSVEWDILEV-PAVRNEKFYTCCDEPYLDITFNITMRR 239
             |..|.::|.|   :..||..|.|.|....||::||| |..:  :|.......|.::.|.:.:||
Mouse   184 -LHTIQDINITLWRSPEEVRSDKSIFINQGEWELLEVFPQFK--EFSIDISNSYAEMKFYVIIRR 245

  Fly   240 KTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLL 304
            :.|||.|:|::|.:.:..:.|:.|.||.||||:||..|::||..:||.:::::.:|.|::..||:
Mouse   246 RPLFYAVSLLLPSIFLMVVDIVGFCLPPDSGERVSFKITLLLGYSVFLIIVSDTLPATAIGTPLI 310

  Fly   305 GKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLVM------RRPLYPI 363
            |.:.:..|.|...|:..|:.::.:..:......:..|:|.:.::::...|.:      .||  |.
Mouse   311 GVYFVVCMALLVISLAETIFIVRLVHKQDLQRPVPDWLRHLVLDRIAWILCLGEQPMAHRP--PA 373

  Fly   364 SEMIKSSRRLMVRTCNGLEL---------------------RDQIPPLPPP 393
            :.....:     ..|:|.:|                     |.:..|||||
Mouse   374 TFQANKT-----DDCSGSDLLPAMGNHCSHVGGPQDLEKTPRGRGSPLPPP 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 74/223 (33%)
Neur_chan_memb 248..>359 CDD:280999 29/116 (25%)
Neur_chan_memb <683..760 CDD:280999
Htr3aNP_038589.2 LIC 5..483 CDD:273305 126/438 (29%)
HA-stretch 425..461
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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