DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and LOC1279487

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_061513970.1 Gene:LOC1279487 / 1279487 VectorBaseID:AGAMI1_005449 Length:433 Species:Anopheles gambiae


Alignment Length:365 Identity:81/365 - (22%)
Similarity:148/365 - (40%) Gaps:65/365 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 WFQVTIDMILVLSFISSSTANPDAKR---LYDDLL-SNYNKLVRP------VVNVTDALTVRIKL 57
            |..:.::.:|..:.:..::......|   |.|.|| ..|...|||      .||||.|..|    
Mosquito    17 WITLLLNHVLPAASLECNSEKQLENRENQLKDTLLCKGYRTNVRPRKDHTQTVNVTVAYYV---- 77

  Fly    58 KLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDI----VLYNNA 118
               ...:....:.::...:|:|..|.|..|:|...|:.|:|.|.:.|:.||.||.    ..||..
Mosquito    78 ---LTYEFEESDNLLQLGVWMELQWTDEYLRWNSTEWSGIERLAIGSEEIWMPDFRHFSSYYNPE 139

  Fly   119 DGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHI 183
            |.|  .....|.::...|.|...|.....:.|:.|...:|||...|.:.:|:|.....:||:..:
Mosquito   140 DLN--ECANPKCSVAPNGTVVCLPVCGMNAKCDADYSRWPFDVHRCNLWYGTWANSMDEVDVHIL 202

  Fly   184 DELNGTNVVEVGVDLSEFYTSVEWDILEV----PAVRNEKFYTCCDEPYLDITFNITMRRKTLFY 244
            |...|.|        .|| .|.:|:::.:    ..|::...|.     |..:...:.:.|:..:.
Mosquito   203 DVCLGRN--------PEF-KSPKWNVISLATGRSVVQSSDNYM-----YNVLNVEVMLVRRASYE 253

  Fly   245 TVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVF--FLLLAEI---IPPTSLVVPLL 304
            .|.::.|.:.::...:.:.:|.|.|.|:     .:||.|::|  |..|.::   :|.....:|  
Mosquito   254 YVAIVGPILVLALFNVYIVWLRSISFER-----KVLLGLSIFSHFSYLKQLEWALPYNRDTLP-- 311

  Fly   305 GKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRT 344
             ..::|.:....|::.:.:..|           :..|:||
Mosquito   312 -DCMIFMVCSTVFTVLLLIFTL-----------LNCWIRT 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 59/235 (25%)
Cys-loop 150..164 CDD:349832 5/13 (38%)
LGIC_TM_nAChR 242..>331 CDD:349866 17/93 (18%)
TM1 helix 242..266 CDD:349866 2/23 (9%)
TM2 helix 274..295 CDD:349866 6/25 (24%)
TM3 helix 306..328 CDD:349866 3/21 (14%)
Neur_chan_memb <683..760 CDD:460753
LOC1279487XP_061513970.1 None
Blue background indicates that the domain is not in the aligned region.

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