DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and LOC1271417

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_061511672.1 Gene:LOC1271417 / 1271417 VectorBaseID:AGAMI1_001738 Length:411 Species:Anopheles gambiae


Alignment Length:392 Identity:95/392 - (24%)
Similarity:165/392 - (42%) Gaps:62/392 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 AKRLYDDLLSNYNKLVRPV--VNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLK 88
            |..|..|||..|:..:||.  .|||   ||...:.::. :::|.....::...|::..|||.:|.
Mosquito    39 ADTLKKDLLKGYDPSIRPSQHYNVT---TVETGITITH-VEINEIKSTLSVYGWMKFKWYDARLA 99

  Fly    89 WEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEID 153
            |||:..|.|..|.:....||:|.:    :..|.. |.:.:...|.||..::      .:|.|.|.
Mosquito   100 WEPQLNGNVTQLFLNQSAIWQPTL----DEKGPL-VKVTSNGLLEYTNALQ------QQSKCTIQ 153

  Fly   154 VEYFPFDEQTCVMKFGSWT-YDGFQVDLRHI--DELNGTNVVEVGVDLSEFYTSVEWDILEVPAV 215
            .:.:|||.|.|.|.|..|. .||.::.::.:  :...||....:.:.| |.:|::  |:.|.|..
Mosquito   154 WQRWPFDTQQCRMLFSPWAEVDGMEIHVKMLKYEIAQGTMWTVMNMTL-ETHTAI--DVHETPVH 215

  Fly   216 RNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSL-SISI 279
            |.....             :.::|.:..|...:..|...:..:.:|.|:||.:.|||:.| :|::
Mosquito   216 RGTHLV-------------VELKRNSGIYRSTITAPACVLILMNLLSFWLPPNCGEKLILNAINV 267

  Fly   280 LLSLTVFFLL-----LAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMA 339
            |  :|..||:     |:.....|..||...|:    ::.|..|.:.:|| ||....:|.....:.
Mosquito   268 L--ITCMFLIHFNEYLSYYTTSTPTVVLFFGQ----SLYLSGFCLLMTV-VLECVVKSNSKKPLH 325

  Fly   340 PWVRTVFINQLPRFLVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMHHSPK 404
            |.::.:...:|...:        ||......:.|....|..|:...::..     |||.....|.
Mosquito   326 PALKKLITFELIAMI--------ISTNKTDEKCLGDEMCETLQDEQEVEE-----ALSSTRQRPT 377

  Fly   405 TT 406
            .|
Mosquito   378 AT 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 56/221 (25%)
Cys-loop 150..164 CDD:349832 6/13 (46%)
LGIC_TM_nAChR 242..>331 CDD:349866 26/94 (28%)
TM1 helix 242..266 CDD:349866 4/23 (17%)
TM2 helix 274..295 CDD:349866 7/26 (27%)
TM3 helix 306..328 CDD:349866 6/21 (29%)
Neur_chan_memb <683..760 CDD:460753
LOC1271417XP_061511672.1 None
Blue background indicates that the domain is not in the aligned region.

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