DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and LOC116410385

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_031756604.1 Gene:LOC116410385 / 116410385 XenbaseID:XB-GENE-29096091 Length:456 Species:Xenopus tropicalis


Alignment Length:399 Identity:112/399 - (28%)
Similarity:178/399 - (44%) Gaps:55/399 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 VRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSD 105
            |||.:..||...|.:.|.|..:||::::.||:||.:|...||.:..:.|:...|.|:|.:.|...
 Frog    42 VRPTMVWTDRTNVTLDLALYSIIDLDMQQQIITTYIWFSMSWKNDFVNWDSNTYCGIEKVVVSDT 106

  Fly   106 HIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 170
            .:||||:.:|...|.:.:........:.|.|.|....|.....||.:....||||||.|.:.|||
 Frog   107 LVWRPDLYIYEMVDDDDKSPKINYLKIYYNGIVTNSKPLRIAGSCSMQNFKFPFDEQNCSLTFGS 171

  Fly   171 WTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDEP---YLDIT 232
            :.|:.|:|.:  :...|.:.|.|...|:  |.|..:|.:|.: .|||...      |   :..:|
 Frog   172 YVYNDFEVYM--MAASNSSQVTENSKDI--FRTKGDWILLNI-IVRNNPL------PSGNFNRVT 225

  Fly   233 FNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPT 297
            :.|.::|..:.|..|||:|...:..|.|...::....| :::..::|:|..:|..|:|:.:: |.
 Frog   226 YEIHIKRNPIIYVFNLILPACFLVILDIASMFMEGTEG-RLTFKVTIVLGFSVLLLILSGML-PN 288

  Fly   298 SLVVPLLGKFVLFTMILDTFSICVTVLVLNI-------HFRSPQTHTMAP-WVRTVFINQLPRFL 354
            |...|:||.|         ||:|:.::||:|       ..|:.......| |::...|..|...|
 Frog   289 SDTPPMLGIF---------FSVCMIMMVLSIGGCICTVSMRTKCATASVPLWIKKWIIGYLACVL 344

  Fly   355 VMRRPLYPISE-MIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMH---HSPKTTSRSTSPHLQ 415
            ......  |.| ::|...|  :.||.    .||.|.....|...|.:   ..|.|||        
 Frog   345 CYETKF--IKEHLVKVVSR--IHTCE----HDQKPTNKIEVEEKRRNLADEDPITTS-------- 393

  Fly   416 HRVQTYNLM 424
              ||..|.|
 Frog   394 --VQILNKM 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 62/204 (30%)
Cys-loop 150..164 CDD:349832 7/13 (54%)
LGIC_TM_nAChR 242..>331 CDD:349866 25/95 (26%)
TM1 helix 242..266 CDD:349866 7/23 (30%)
TM2 helix 274..295 CDD:349866 5/20 (25%)
TM3 helix 306..328 CDD:349866 6/21 (29%)
Neur_chan_memb <683..760 CDD:460753
LOC116410385XP_031756604.1 LGIC_ECD 23..233 CDD:475126 61/201 (30%)
LGIC_TM 235..>319 CDD:476813 25/94 (27%)
TM1 helix 239..259 CDD:349850 6/19 (32%)
TM2 helix 266..287 CDD:349850 5/21 (24%)
TM3 helix 297..319 CDD:349850 7/30 (23%)
Blue background indicates that the domain is not in the aligned region.

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