DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha3 and Chrne

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_006532069.1 Gene:Chrne / 11448 MGIID:87894 Length:494 Species:Mus musculus


Alignment Length:481 Identity:152/481 - (31%)
Similarity:248/481 - (51%) Gaps:68/481 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTN 75
            :|:|:....|....:...||..|..||:...|||....|.:|:.:|:.|:.||.:|.|.:.:||:
Mouse     9 LLLLTLFGRSQGKNEELSLYHHLFDNYDPECRPVRRPEDTVTITLKVTLTNLISLNEKEETLTTS 73

  Fly    76 LWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 140
            :|:...|:||:|.:...::.||.:|.|||:|:|.|:|||.||.||.|.|...:...:...|.|.|
Mouse    74 VWIGIDWHDYRLNYSKDDFAGVGILRVPSEHVWLPEIVLENNIDGQFGVAYDSNVLVYEGGYVSW 138

  Fly   141 RPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSV 205
            .|||||:|:|.::|.|||||.|.|.:.|.|.||:..:|:.....:.:|..:.::.:|.:.|..:.
Mouse   139 LPPAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYNAEEVEFIFAVDDDGNTINKIDIDTAAFTENG 203

  Fly   206 EWDILEVPA-VRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDS 269
            ||.|...|. :|..:..:.......|:.:.:.:|||.|||.:|:|:||:.||.|.:|.::||:.:
Mouse   204 EWAIDYCPGMIRRYEGGSTEGPGETDVIYTLIIRRKPLFYVINIIVPCVLISGLVLLAYFLPAQA 268

  Fly   270 -GEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSP 333
             |:|.::||::||:.|||..|:|:.||.|||.|||||::::|.|::.|..:...|:|||:..|:|
Mouse   269 GGQKCTVSINVLLAQTVFLFLIAQKIPETSLSVPLLGRYLIFVMVVATLIVMNCVIVLNVSLRTP 333

  Fly   334 QTHTMAPWVRTVFINQLPRFLVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSR 398
            .||..:|.:|.:.:..|||             ::.||                    |||     
Mouse   334 TTHATSPRLRQILLELLPR-------------LLGSS--------------------PPP----- 360

  Fly   399 MHHSPKTTS---RSTSPHL---------------------QHRVQTYNLMDECGMGMGGGASTIT 439
              ..|:|.|   |::|..:                     :||..|:.....| ..:|..|..|.
Mouse   361 --EDPRTASPARRASSVGILLRAEELILKKPRSELVFEGQRHRHGTWTAAALC-QNLGAAAPEIR 422

  Fly   440 GHLSSLYPPTMSTANQQTSTTSSLID 465
            ..:.::.....||.:|: :|...|.|
Mouse   423 CCVDAVNFVAESTRDQE-ATGEELSD 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 75/215 (35%)
Neur_chan_memb 248..>359 CDD:280999 46/111 (41%)
Neur_chan_memb <683..760 CDD:280999
ChrneXP_006532069.1 LGIC_ECD_nAChR_E 49..239 CDD:349831 65/189 (34%)
Neur_chan_memb 247..474 CDD:367256 69/243 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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