DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and chrna2

DIOPT Version :9

Sequence 1:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_004914998.2 Gene:chrna2 / 100495873 XenbaseID:XB-GENE-1013893 Length:510 Species:Xenopus tropicalis


Alignment Length:736 Identity:241/736 - (32%)
Similarity:329/736 - (44%) Gaps:266/736 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEP 91
            :||:..|.:.||:..|||.|.:|.:.|:..|.::|||||:.|||:||||:|::|.|.||||:|.|
 Frog    33 ERLFKRLFTGYNRWSRPVPNTSDVVIVKFGLSIAQLIDVDEKNQMMTTNVWLKQEWNDYKLRWNP 97

  Fly    92 KEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEY 156
            .:|..|..:.|||:.||.|||||||||||.|.:|..|||.|.:.|:|:|.|||||||||.|||.:
 Frog    98 ADYDNVTSIRVPSEMIWIPDIVLYNNADGEFAITHMTKAHLFHNGKVKWVPPAIYKSSCSIDVTF 162

  Fly   157 FPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNEKFY 221
            ||||:|:|.|||||||||...:||..         :|..|||.:::.|.||.|:......|.|.|
 Frog   163 FPFDQQSCKMKFGSWTYDKAWLDLES---------MERNVDLKDYWESGEWAIVNAVGKYNSKKY 218

  Fly   222 TCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVF 286
            .||.|.|.|||:...:||..||||:||||||:.||.||:||||||||.|||::|.||:|||||||
 Frog   219 DCCTEIYPDITYYFIIRRLPLFYTINLIIPCLLISCLTVLVFYLPSDCGEKITLCISVLLSLTVF 283

  Fly   287 FLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLP 351
            .||:.||||.||||:||:|:::|||||..|.||.:||.|||:|.|||.||.|..|||:||::.:|
 Frog   284 LLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPSTHKMPLWVRSVFLDHIP 348

  Fly   352 RFLVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMHHSPKTTSRSTSPHLQH 416
            |:|.|:||..|:.|::                                       |:..:|.|  
 Frog   349 RWLFMKRPPAPVEEVV---------------------------------------SQYDAPEL-- 372

  Fly   417 RVQTYNLMDECGMGMGGGASTITGHLSSLYPPTMSTANQQTSTTSSLIDAQYHNQYQQTGGSLLD 481
                                                   :.||:...::....:::.:....|  
 Frog   373 ---------------------------------------KLSTSKYWMETDVDDKWAEPEAEL-- 396

  Fly   482 HPLTPTKFRQMTSTSSQTGQNGSGNGNGNGGYGGHGQSGGHHLYRQQSSCSANFSPLPQHAHQAH 546
                                                                      |..|..|
 Frog   397 ----------------------------------------------------------QTCHVRH 403

  Fly   547 ASTTTSDLGMANPNVIKSTTTVNSVATASTLADSCCSGTIQIHQGMGAGAACQSSELLHHQQLHH 611
            .:|                                                              
 Frog   404 MTT-------------------------------------------------------------- 406

  Fly   612 QQMHHQQQQQQQQQHHHHQRPTTSAAAAAAAAAAGGPSTSAAAAAAAAAAAAGTPPPPPPPAGVC 676
                |.|..|.:..::||              .:||.|.:...::...|.::             
 Frog   407 ----HNQSLQYRYDYNHH--------------VSGGQSQTPRHSSTETAESS------------- 440

  Fly   677 DILPACQREGGPHCCSGRGNVRQRWHTCPELHKAMDGVTYIADQTRKEEESTRVKEDWKYVAMVL 741
                                    :...|.:.||::||.|||:..|.|:....|||||||||||:
 Frog   441 ------------------------FLLSPSVLKALEGVHYIANHLRAEDADFSVKEDWKYVAMVI 481

  Fly   742 DRLFLWIFTIAVVVGTAGIIL 762
            ||:|||:|.|..::||.|:.|
 Frog   482 DRIFLWMFIIVCLLGTVGLFL 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 109/213 (51%)
Neur_chan_memb 248..>359 CDD:280999 72/110 (65%)
Neur_chan_memb <683..760 CDD:280999 30/76 (39%)
chrna2XP_004914998.2 LIC 9..503 CDD:273305 241/736 (33%)
LGIC_ECD_nAChR_A2 32..238 CDD:349816 109/213 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 252 1.000 Domainoid score I2037
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 477 1.000 Inparanoid score I1443
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 1 1.000 - - FOG0000583
OrthoInspector 1 1.000 - - mtm14085
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X294
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.970

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