DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and LOC100494266

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_002932551.2 Gene:LOC100494266 / 100494266 XenbaseID:XB-GENE-29082107 Length:457 Species:Xenopus tropicalis


Alignment Length:370 Identity:96/370 - (25%)
Similarity:179/370 - (48%) Gaps:24/370 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LVLSFISSSTANPDAKRLYDDLLSNYNKL------VRPVVNVTDALTVRIKLKLSQLIDVNLKNQ 70
            |:||.|....|..:.....:|:|.|.:..      :|||.|......|.|.:.|..::.::..:|
 Frog     8 LLLSAILLGRAECNRICSLNDVLQNISLASIPGANIRPVKNWQTPSEVFIHVTLYSIVSLDTSSQ 72

  Fly    71 IMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYT 135
            .:||.:|:...|.:..:.|.|.::..::.:....|.:|:||:.:|...:.:.:..:.....:...
 Frog    73 TLTTYIWLYLKWKNEFISWNPVDFCDIDEVTSLGDTLWKPDLYIYQLVEPDDKNPVIPYYRIQND 137

  Fly   136 GRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSE 200
            |.:....|....|||.|::..||||.|||.:.|||:.|.  ..|:.....||.:.|.::.:|  .
 Frog   138 GDIVSSKPLRIISSCNINIFKFPFDTQTCNLTFGSFIYT--VEDIIMFPSLNSSEVSQLSLD--S 198

  Fly   201 FYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYL 265
            |.:..:|.:|:| ||.|:....  |..:.::|:.|||:|.::.:.:|||:|...:.||.....::
 Frog   199 FVSKGDWSLLDV-AVVNQSLVG--DGQFSEVTYMITMKRSSVVFVINLIVPACFLIFLDFASMFI 260

  Fly   266 PSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHF 330
              ..||.:...|:|:|..:|..|:|.::: |:|...|:||.|.:..:.:...||...:|...:..
 Frog   261 --RIGETLEFKITIVLGFSVLLLILNDMM-PSSDNPPMLGIFCVVCLAIMVISILGCILTNYMLT 322

  Fly   331 RSPQTHTMAPWVRTVFINQLPRFLVMRRPLYPISEMIKSSRRLMV 375
            .|.....:..|::|:.:..|.|.|..:  ||      |:.:.|:|
 Frog   323 LSDMQPNVPNWIKTLILKHLARILFFK--LY------KNEQNLVV 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 57/223 (26%)
Cys-loop 150..164 CDD:349832 7/13 (54%)
LGIC_TM_nAChR 242..>331 CDD:349866 23/88 (26%)
TM1 helix 242..266 CDD:349866 6/23 (26%)
TM2 helix 274..295 CDD:349866 6/20 (30%)
TM3 helix 306..328 CDD:349866 4/21 (19%)
Neur_chan_memb <683..760 CDD:460753
LOC100494266XP_002932551.2 LGIC_ECD 24..234 CDD:475126 56/216 (26%)
LIC 43..434 CDD:455710 88/335 (26%)
Blue background indicates that the domain is not in the aligned region.

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