DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha3 and chrna1

DIOPT Version :10

Sequence 1:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster
Sequence 2:XP_002934647.1 Gene:chrna1 / 100145177 XenbaseID:XB-GENE-977139 Length:457 Species:Xenopus tropicalis


Alignment Length:354 Identity:173/354 - (48%)
Similarity:240/354 - (67%) Gaps:15/354 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LVLSFISSST--ANPDAKRLYDDLLSNYNKLVRPVVNVTDALTVRIKLKLSQLIDVNLKNQIMTT 74
            |:..||:::.  ::.|..||.:||..:|||:||||....|.:.|.:.|:|.|||:|:..|||:||
 Frog     8 LIFLFIAATLVFSSEDESRLINDLFKSYNKVVRPVKAFKDKVVVTLGLQLIQLINVDEVNQIVTT 72

  Fly    75 NLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 139
            |:.::|.|.|..|||.|::|||::.:.:.|..||||||||||||||:|.:...||..|:|||::.
 Frog    73 NVRLKQQWEDVHLKWNPEDYGGIKKVRISSGDIWRPDIVLYNNADGDFAIVQETKVLLDYTGKII 137

  Fly   140 WRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTS 204
            |.||||:||.||:.|.|||||.|.|.||.|:|||||..|.:         |......|||.|..|
 Frog   138 WTPPAIFKSYCEMIVTYFPFDLQNCSMKLGTWTYDGSLVVI---------NPESDRPDLSNFMES 193

  Fly   205 VEWDILEVPAVRNEKFYTCCDE-PYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSD 268
            .||.:.:....::..:|.||.| ||||||::..::|..|::.||::|||:..||||.||||||:|
 Frog   194 GEWYMKDYRGWKHWVYYDCCPETPYLDITYHFLLQRLPLYFIVNVVIPCLLFSFLTGLVFYLPTD 258

  Fly   269 SGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSP 333
            ||||::||:|:||||.||.|::.|:||.||..|||:||::||||:....||.:||:|:|.|.|||
 Frog   259 SGEKITLSVSVLLSLVVFLLVIVELIPSTSSAVPLIGKYMLFTMVFVITSIVITVIVINTHHRSP 323

  Fly   334 QTHTMAPWVRTVFINQLPR---FLVMRRP 359
            .||.|..|::.:||..:||   |..|:||
 Frog   324 STHIMPQWLKKIFIETIPRVMFFSTMKRP 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 103/218 (47%)
Cys-loop 150..164 CDD:349832 9/13 (69%)
LGIC_TM_nAChR 242..>331 CDD:349866 52/88 (59%)
TM1 helix 242..266 CDD:349866 14/23 (61%)
TM2 helix 274..295 CDD:349866 11/20 (55%)
TM3 helix 306..328 CDD:349866 10/21 (48%)
Neur_chan_memb <683..760 CDD:460753
chrna1XP_002934647.1 LIC 21..447 CDD:455710 170/341 (50%)
LGIC_ECD_nAChR_A1 22..231 CDD:349815 103/217 (47%)
Cys-loop 148..162 CDD:349815 9/13 (69%)
Blue background indicates that the domain is not in the aligned region.

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