DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1632 and corin

DIOPT Version :9

Sequence 1:NP_001245577.1 Gene:CG1632 / 31763 FlyBaseID:FBgn0030027 Length:1056 Species:Drosophila melanogaster
Sequence 2:XP_009295418.2 Gene:corin / 100320926 ZFINID:ZDB-GENE-060224-3 Length:1036 Species:Danio rerio


Alignment Length:748 Identity:157/748 - (20%)
Similarity:247/748 - (33%) Gaps:247/748 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   385 CSPLELSYCRQVGYNITTYPNLLGHASYEQ--LAEDVIVFRELVDGECHREAYDFVCRLLQPPCD 447
            |.|:.|..|..:.||.|.:||.|||.|.::  ::.:..:|..||...|::....|.|.:|.|.||
Zfish   449 CEPISLEICMNLPYNTTRFPNYLGHQSQKETSVSWESSLFPALVQTNCYKYLMFFACTVLVPMCD 513

  Fly   448 THGSDLQPTPGQICR---EYCESFMAGCGGRLPQRFRQFFDCERFPES----------------- 492
            .......|....:||   :.|||.:...|.:.|:.    .||.:|||.                 
Zfish   514 PVTQQRVPPCRSLCRNSKDRCESVLGIVGLQWPED----TDCAQFPEEGQANSSCLLPDPDVNEC 574

  Fly   493 -------------TGTQSCHQKPHCVSDM------------------QSNVQSPRLCDGYADCPD 526
                         ..::.|.....|..|.                  :|.:....:|||:.||..
Zfish   575 SPSHFKCRSGRCVLSSKRCDGHTDCDDDSDEEMC
GCLERGLWECPGDKSCIPHSMICDGFPDCSQ 639

  Fly   527 LSDERSCAFCSPNALYCGRGRACVPRKARCDGKADCPDGADEKDCLSIAPLAADLLQPEPLVPYL 591
            ..||.:|:.||.:.|.| ....||.|...|||:..|.|.:||.:|:|::                
Zfish   640 HEDENNCSACSSHELEC-NNHECVHRALWCDGRRHCSDSSDEWNCVSLS---------------- 687

  Fly   592 SRFHSAGYAVFSEKGVVGKLCAEGLEGDAKLVVRQTVSESLCKSLGYESVEIFDVQNDTE---RL 653
                ..|..:..:.|:...:||:|...:...|.        |..:|..|....|...|..   |.
Zfish   688 ----DEGSLLVYKAGLEYHVCADGWSPNHSSVT--------CTQMGLGSPLSTDAMLDVSPVVRR 740

  Fly   654 NDYVRVLDPHAPE--------ISFIRTHCPRRQVLYVGCGELRCGVQSALFNAKQHLSLPKMSAP 710
            ..::.|....:||        :......|...:.:.:.|....||.:.|....|:.|. .:.|.|
Zfish   741 KRWLHVDPDWSPENMLPLQGLLEKRGQSCQSYKKISLQCTRDECGRRPAARLVKRILG-GRTSRP 804

  Fly   711 GDWPWLVALFREDI-HVCDGTLITQDWVLTTEGCFQGQPRA-TWMAIVGAVRLSAKAPWTQRRRI 773
            |.|||..:|..:.. |:|...||...|.||...||:|:..| .|..::|...|...:|:.|.||:
Zfish   805 GRWPWQCSLQSDPSGHICGCVLIGNKWALTVAHCFEGRESADVWKVVLGINNLDHPSPYMQTRRV 869

  Fly   774 IGMI-----KSPVEGSTAALVRLETPVSYSDHVRPICLPDALQRRLLQQPPAQRRSHVPVAERLE 833
            ..:|     ...|.....:::.||:.|..:.:|||:|||                        ..
Zfish   870 KSIIVHSRYNRAVVDYDISVLELESEVLVTSYVRPVCLP------------------------RH 910

  Fly   834 GQLVSQQRSRLSQENQQFFLIPSQEQQDSSTENQGDEDQDEQEDHFGGESAASYMPKAEALHQEL 898
            |||                                                              
Zfish   911 GQL-------------------------------------------------------------- 913

  Fly   899 DGYPLPDHAPQVNYYSSSSTVTSSSTAARIATKAPILAAVPAAQEQIWTNCNTLGW----SRQRD 959
               |.||     .|                                    |:..||    :|...
Zfish   914 ---PKPD-----KY------------------------------------CHITGWGHVGNRMPF 934

  Fly   960 HLQRVQLKMGDMAPCEN-VSIATVNSMCMEATYQK---YDCTQEEYSGAPVQCLIPGTNQWALIG 1020
            .||..::::..::.|:: ..:.|:.|..:.|.|:.   ..|..:  ||.|:.| ......|:|.|
Zfish   935 KLQEGEVRIISVSQCQSYFDMKTITSRMLCAGYEAGTIDSCMGD--SGGPLVC-EEDDGHWSLYG 996

  Fly  1021 VSSWRIACGPTGVERPRMYDKIASNAAWIRETI 1053
            ::||...|. :.|..|.:|..:.....||...|
Zfish   997 LTSWGSVCF-SKVLGPGVYANVTHFTEWIERQI 1028

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1632NP_001245577.1 SEA 232..327 CDD:279699
CRD_FZ 384..502 CDD:143549 37/151 (25%)
PRKCSH-like <503..>582 CDD:193472 27/96 (28%)
LDLa 536..571 CDD:238060 14/34 (41%)
Tryp_SPc 708..>809 CDD:304450 36/107 (34%)
corinXP_009295418.2 CRD_corin_1 136..258 CDD:143554
LDLa 268..299 CDD:238060
LDLa 301..335 CDD:238060
Ldl_recept_a 342..372 CDD:278486
LDLa 382..409 CDD:238060
CRD_corin_2 448..569 CDD:143579 36/123 (29%)
LDLa 574..608 CDD:238060 3/33 (9%)
LDLa <620..646 CDD:238060 8/25 (32%)
LDLa 649..683 CDD:238060 14/34 (41%)
SR 689..>728 CDD:214555 9/46 (20%)
Tryp_SPc 796..1027 CDD:238113 71/365 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 181 1.000 Inparanoid score I3976
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.960

Return to query results.
Submit another query.