DRSC/TRiP Functional Genomics Resources

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Protein Alignment sni and SPCC24B10.20

DIOPT Version :9

Sequence 1:NP_001285012.1 Gene:sni / 31761 FlyBaseID:FBgn0030026 Length:247 Species:Drosophila melanogaster
Sequence 2:NP_588023.1 Gene:SPCC24B10.20 / 2538958 PomBaseID:SPCC24B10.20 Length:254 Species:Schizosaccharomyces pombe


Alignment Length:262 Identity:83/262 - (31%)
Similarity:127/262 - (48%) Gaps:40/262 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDK 69
            :|.|.|||:||.|||.|.|  :....:|.:.|....|.||:|.:|.|||:||:::|:.:..:...
pombe    10 VIVGGNRGIGLSLVKELSN--KEGVTVFASARGPGSASELKDWSKTHSNVHIIKLDVTSLRSAKD 72

  Fly    70 LVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQEL-LDTLQTNTVVPIMLAKACLPLLKKAA 133
            ....:|.|.|  .::||:.|:||: ||.:.....|.|| :...|||.:.||.:.:|...|||:..
pombe    73 AAMQVEKVVK--CIDVLWVNSGIS-KSFQPVLKTSDELWMSHYQTNVLGPIHVYQAFYHLLKEGK 134

  Fly   134 KANESQPMGVGRAAII---NMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCV 195
            ..|           |:   :|::.:|.::.||   ..||..||:|||...|.:|.:|.....:.|
pombe   135 LKN-----------IVFTSSMAACMGGVRPNT---YSAYGQSKAALNYTMKEISFELEKDGFVVV 185

  Fly   196 SLHPGWVKTDM-----------------GGSSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGT 243
            |:|||.|.|||                 ...|..:....|...:::.:..|..:.||.|.|.|||
pombe   186 SIHPGVVNTDMFVNAMQKLASKYPEMVESIKSNAISPEQSASSMLKIVDNLKTEDNGMFYNLDGT 250

  Fly   244 PL 245
            .|
pombe   251 KL 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sniNP_001285012.1 carb_red_sniffer_like_SDR_c 4..247 CDD:187586 83/262 (32%)
adh_short 4..209 CDD:278532 72/224 (32%)
SPCC24B10.20NP_588023.1 carb_red_sniffer_like_SDR_c 9..254 CDD:187586 83/262 (32%)
adh_short 10..199 CDD:278532 72/207 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 95 1.000 Domainoid score I1937
eggNOG 1 0.900 - - E2759_KOG1611
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H71144
Inparanoid 1 1.050 102 1.000 Inparanoid score I1640
OMA 1 1.010 - - QHG53570
OrthoFinder 1 1.000 - - FOG0000614
OrthoInspector 1 1.000 - - otm47301
orthoMCL 1 0.900 - - OOG6_100338
Panther 1 1.100 - - O PTHR43544
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X192
TreeFam 1 0.960 - -
1312.830

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