DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trxr-1 and LPD1

DIOPT Version :9

Sequence 1:NP_727251.1 Gene:Trxr-1 / 31760 FlyBaseID:FBgn0020653 Length:596 Species:Drosophila melanogaster
Sequence 2:NP_116635.1 Gene:LPD1 / 850527 SGDID:S000001876 Length:499 Species:Saccharomyces cerevisiae


Alignment Length:500 Identity:129/500 - (25%)
Similarity:223/500 - (44%) Gaps:50/500 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 YAQPVRKMSTKGGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWG-VGGTC 162
            ::..||.::.   :..:|:::||||.||...|.:|...|...||::          |.| :||||
Yeast    14 FSSTVRTLTI---NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVE----------KRGKLGGTC 65

  Fly   163 VNVGCIPKKLMHQASLLGEAVH-EAAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDK 226
            :||||||.|.:...|.|...:| ||...|.:|:..||.:.....::..:.:|.:.....:..:..
Yeast    66 LNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKN 130

  Fly   227 KVEYINGLGSFVDSHTLLAKLKSG-------ERTITAQTFVIAVGGR-PRYPDIPGAVEYGITSD 283
            ||.|..|.|||.|...:......|       :..:..:..::|.|.. ..:|.|....|..::|.
Yeast   131 KVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSST 195

  Fly   284 DLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRSIVLRGFDQQMAELVAASMEERGI 347
            ...||...|.:..::|.|.||||.......||.:.||: .:..:....|.::|:.....::::|:
Yeast   196 GALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL 260

  Fly   348 PFLRKTVPLSVEKQDDGKLL-VKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK- 410
            .|...|..:|.::.||..:: :..::.:|.::.....:.:|.|:||:..:..|.....|:.|.| 
Yeast   261 DFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKR 325

  Fly   411 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPL 475
            .::.:|.|..:...:|..|||:.:| |.|...|...|......|..|. ..::|.::.:.:::..
Yeast   326 GRLVIDDQFNSKFPHIKVVGDVTFG-PMLAHKAEEEGIAAVEMLKTGH-GHVNYNNIPSVMYSHP 388

  Fly   476 EYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHG---------DQR 531
            |.|.||.:||. :|:.|.|        ||..:|.....|    ..|...:..|         .:|
Yeast   389 EVAWVGKTEEQ-LKEAGID--------YKIGKFPFAANS----RAKTNQDTEGFVKILIDSKTER 440

  Fly   532 VYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEF 576
            :.|.|.|||.|||:|.....||:.|.:...:......|||.:|.|
Yeast   441 ILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAF 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trxr-1NP_727251.1 TGR 113..595 CDD:273624 126/485 (26%)
NADB_Rossmann 115..>150 CDD:304358 12/34 (35%)
Pyr_redox 294..368 CDD:278498 18/75 (24%)
Pyr_redox_dim 468..577 CDD:280934 32/117 (27%)
LPD1NP_116635.1 Pyr_redox_2 24..498 CDD:423044 126/486 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1249
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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