DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trxr-1 and dldh

DIOPT Version :9

Sequence 1:NP_727251.1 Gene:Trxr-1 / 31760 FlyBaseID:FBgn0020653 Length:596 Species:Drosophila melanogaster
Sequence 2:NP_958914.1 Gene:dldh / 399479 ZFINID:ZDB-GENE-040120-4 Length:507 Species:Danio rerio


Alignment Length:542 Identity:146/542 - (26%)
Similarity:238/542 - (43%) Gaps:69/542 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 HHTFQRTMNLTGQRGSRDSTGATGGNAPAGSGAGAPPPFQHPHCDRAAMYAQPVRKMSTKGGSYD 114
            :|.: ||:...||.......|||..:|             ..:.|:||:               |
Zfish     5 NHLY-RTLATRGQHLPCKLHGATVLSA-------------RTYADKAAI---------------D 40

  Fly   115 YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLL 179
            .|:.|:|.|..|...|.:|...|.:..|   |:...||      ||||:||||||.|.:...|.|
Zfish    41 ADVTVVGSGPGGYVAAIKAAQLGFKTVC---VEKNATL------GGTCLNVGCIPSKALLNNSYL 96

  Fly   180 GEAVH--EAAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHT 242
            ....|  :..:.|..: :.|..:..|::......:|::........:..||.::||.|:....:.
Zfish    97 YHMAHGKDFESRGIEI-QGISLNLEKMMAQKSGAVKALTGGIAHLFKQNKVTHVNGFGTITGKNQ 160

  Fly   243 LLAKLKSGERTITAQTFVIAVGGR-PRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLE 306
            :.||...||:.|..:..:||.|.. ..:|.|....:..::|....||...|.:.:|:|||.||:|
Zfish   161 VTAKTADGEQVINTKNILIATGSEVTPFPGIEIDEDSVVSSTGALSLKNVPEELIVIGAGVIGVE 225

  Fly   307 CAGFLKGLGYEPTVM--VRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVK 369
            .....:.||.:.|.:  :..:...|.|.::::.....::::|:.|...|..:...|:.|||:.|.
Zfish   226 LGSVWQRLGAKVTAVEFLGHVGGMGIDMEISKNFQRILQKQGLKFKLSTKVMGATKRPDGKIDVA 290

  Fly   370 YKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIYAVGDII 433
            .:....|:......|.:|..|||:....:|.|.:.|:.:.| .:|||:.:..|||.||||:||::
Zfish   291 VEAAAGGKNETLTCDVLLVCIGRRPFTGNLGLESVGIELDKRGRIPVNGRFQTNVPNIYAIGDVV 355

  Fly   434 YGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEV 498
            .| |.|...|...|.:....:.||:. .:||..|.:.::|..|.|.||.:||. :|:.|..    
Zfish   356 AG-PMLAHKAEDEGIICVEGMAGGAV-HIDYNCVPSVIYTHPEVAWVGKTEEQ-LKEEGVP---- 413

  Fly   499 FHGYYKPTEFFIPQKSVRYCYLKAVAERHG---------DQRVYGLHYIGPVAGEVIQGFAAALK 554
                ||..:|.....|    ..|..|:..|         ..|:.|.|.:|..|||:|...|.|::
Zfish   414 ----YKVGKFPFAANS----RAKTNADTDGLVKILSHKDTDRMLGAHILGSGAGEMINEAALAME 470

  Fly   555 SGLTINTLINTVGIHPTTAEEF 576
            .|.:...:......|||.:|.|
Zfish   471 YGASCEDVARVCHAHPTVSEAF 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trxr-1NP_727251.1 TGR 113..595 CDD:273624 134/479 (28%)
NADB_Rossmann 115..>150 CDD:304358 10/34 (29%)
Pyr_redox 294..368 CDD:278498 19/75 (25%)
Pyr_redox_dim 468..577 CDD:280934 32/118 (27%)
dldhNP_958914.1 PRK06327 42..507 CDD:235779 133/476 (28%)
NADB_Rossmann 44..220 CDD:304358 50/185 (27%)
Pyr_redox 214..286 CDD:278498 17/71 (24%)
Glycosyltransferase_GTB_type <282..376 CDD:299143 31/94 (33%)
Pyr_redox_dim 388..494 CDD:280934 32/118 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1249
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D581771at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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