DRSC/TRiP Functional Genomics Resources

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Protein Alignment Traf6 and traf6

DIOPT Version :9

Sequence 1:NP_511080.2 Gene:Traf6 / 31746 FlyBaseID:FBgn0265464 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001008162.2 Gene:traf6 / 493524 XenbaseID:XB-GENE-480628 Length:558 Species:Xenopus tropicalis


Alignment Length:535 Identity:134/535 - (25%)
Similarity:227/535 - (42%) Gaps:117/535 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 TNLSSTGRIAASSSATPSAAAGGGASGAPT-PPKSLALNQNHHYAPGSDTSGEQEEELLDSRYEC 104
            |:.:..|.:|::............::|:|: .|:||.|.....|....|..       |:|:|||
 Frog    15 TDDACCGAMASACCVNTKEDGESPSAGSPSGTPQSLVLEDVQGYDVEFDPP-------LESKYEC 72

  Fly   105 AICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCPMDNKRLSAEHDIFPDNYTRREIEQLKRDC 169
            .||:..|.|.|.|.||||||::|:...::.....||:||:.| .|:.:||||:.:|||..|:..|
 Frog    73 PICLMALREAVQTPCGHRFCKACILKSIRDAGHKCPVDNESL-MENQLFPDNFAKREILSLRVKC 136

  Fly   170 PNSSLGCSVVASPIELHRHLPSCPY--------------------------RRQ----------- 197
            |  |.||:.......|.|||..|.:                          |||           
 Frog   137 P--SQGCTETMELRHLERHLVRCDFAGVECSQCQSSFPKYSLQKHKFEECPRRQIFCENCAVAMA 199

  Fly   198 ---QEPQEEKCPFAKIKCDF--------------------------------VGRPETNQLEEHL 227
               :...::.||.|.:.|::                                ..:.:.|.|..||
 Frog   200 LEDKLNHDQTCPLAYVTCEYCQTNLIREQMPAHYSMDCTMAPIPCMYYEFGCTEKMQRNDLARHL 264

  Fly   228 KADMPHHMQLM---LQAFQQTAIAT-------------WQPHKPSTSGAAVENGHGQQQLPPPPQ 276
            :.....||::|   |::|..:...|             ::|..||.  |.|.:.|...|.....:
 Frog   265 QEFTQAHMRMMAQTLRSFSSSVTPTSHMPDISFCDPSQFEPAPPSV--ATVHSTHTPSQNDCTQE 327

  Fly   277 YANGVDEQIVQTMYQRIVVLEQRTRE-------QETRLENMQKQLR-LARQQAPVDPRYSNGTIV 333
            ..|  ..:.::.:..|:|..:.:.||       |.|.:..::..:| |..:...::.:..:|..:
 Frog   328 TRN--LRETIEQLEGRLVRQDHQIRELIAKMETQCTYVNELKHTIRSLDNRLGEMESQQCSGIFI 390

  Fly   334 WRIEQLGALVARLRANANNQVYSHECYTSPHGYKFCARLNIQ----PRKPHVLSLHVHLMQSEND 394
            |||....:|:..........::|...||...|||.|.||::|    .|..:.:||.||.||.|.|
 Frog   391 WRINNFNSLLKNQEEERPVVIHSQGFYTGKPGYKLCLRLHLQLPSAQRCANYISLFVHTMQGEYD 455

  Fly   395 YHLDWPFKGRIKLCMVHPAD--ATLSQHDTIMTKPEILAFHKPREAISTRGFGFLEYANISNIIQ 457
            ..|.||.:|.|:|.::..::  |...|.:.:.||||:|||.:|..|.:.:|||::.:.::..:.|
 Frog   456 SLLPWPLQGTIRLSILDQSEGVAMQDQEEVMDTKPELLAFQRPTVARNPKGFGYVTFMHLQALKQ 520

  Fly   458 LGFCADDRLLIKIEI 472
            ..:..:|.||::..:
 Frog   521 RQYVKNDTLLVRCSV 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf6NP_511080.2 RING 103..141 CDD:238093 16/37 (43%)
Sina 163..>230 CDD:302762 22/138 (16%)
MATH_TRAF6 330..473 CDD:239745 48/149 (32%)
traf6NP_001008162.2 mRING-HC-C3HC3D_TRAF6 69..126 CDD:319557 26/57 (46%)
modified RING-HC finger (C3HC3D-type) 72..110 CDD:319557 16/37 (43%)
PLN03086 <134..220 CDD:178635 17/87 (20%)
zf-TRAF 206..263 CDD:280357 6/56 (11%)
Smc <322..>384 CDD:224117 9/63 (14%)
MATH_TRAF6 387..536 CDD:239745 48/149 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 93 1.000 Domainoid score I7445
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3395
Inparanoid 1 1.050 158 1.000 Inparanoid score I4170
OMA 1 1.010 - - QHG50043
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 1 1.000 - - FOG0008003
OrthoInspector 1 1.000 - - otm49412
Panther 1 1.100 - - LDO PTHR10131
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5828
SonicParanoid 1 1.000 - - X5961
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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