Protein Alignment Traf6 and Rnf41

DIOPT Version :9

• Sequence 1: NP_511080.2
• Gene: Traf6 / 31746
• FlyBaseID: FBgn0265464
• Length: 475
• Species: Drosophila melanogaster
• Sequence 2: XP_006240834.1
• Gene: Rnf41 / 362814
• RGDID: 1309557
• Length: 317
• Species: Rattus norvegicus
• Alignment Length: 294
• Identity: 68/294 - (23%)
• Similarity: 110/294 - (37%)
• Gaps: 84/294 - (28%)

  Fly    91 GEQEEELLDSRYECAICIDWLNEPV-LTSCGHRFCRSCLTAWMQKNNQCCPMDNKRLSAEHDIFP 154
            |:.:|:|:     |.||...|.||| ...|.|.||.:|:|.|..: .|.||:|...::..|....
  Rat    10 GDVDEDLI-----CPICSGVLEEPVQAPHCEHAFCNACITQWFSQ-QQTCPVDRSVVTVAHLRPV 68

  Fly   155 DNYTRREIEQLKRDCPNSSLGCSVVASPIELHRHLPSCPYRRQQEPQEEKCPFAKIKCDFVGRPE 219
            ....|..:.:|:..|.|:..|||.|.....|..||..|    :..|:               ||.
  Rat    69 PRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDC----EHNPK---------------RPV 114

  Fly   220 TNQLEEHLKADMP----------HHMQLMLQAFQQTAIATWQPHKPSTSGAAVENGHGQQQLPPP 274
            |  .|:....:||          .|::.::|. |||.||..:.       .:.|:.|   ||...
  Rat   115 T--CEQGCGLEMPKDELPNHNCIKHLRSVVQQ-QQTRIAELEK-------TSAEHKH---QLAEQ 166

  Fly   275 PQYANGVDEQIVQTMYQRIVVLEQRTREQETRLENMQKQLRLARQQAPVDPRYSNGTIVW----- 334
            .:     |.|:::. |.|.:      |.....|:|:::.:..            |..:.|
  Rat   167 KR-----DIQLLKA-YMRAI------RSVNPNLQNLEETIEY------------NEILEWVNSLQ 207

  Fly   335 --RIEQLGALV----ARLRANANNQVYSHECYTS 362
              |:.:.|.::    |.|:|.....:....|..|
  Rat   208 PARVTRWGGMISTPDAVLQAVIKRSLVESGCPAS 241

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Traf6	NP_511080.2	RING	103..141	CDD:238093	16/38 (42%)
		Sina	163..>230	CDD:302762	16/66 (24%)
		MATH_TRAF6	330..473	CDD:239745	8/44 (18%)
Rnf41	XP_006240834.1	mRING-HC-C3HC3D_Nrdp1	15..57	CDD:319548	18/47 (38%)
		USP8_interact	137..315	CDD:401040	27/140 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0297
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D918518at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820