DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf6 and Traf3

DIOPT Version :9

Sequence 1:NP_511080.2 Gene:Traf6 / 31746 FlyBaseID:FBgn0265464 Length:475 Species:Drosophila melanogaster
Sequence 2:XP_038968511.1 Gene:Traf3 / 362788 RGDID:1304633 Length:610 Species:Rattus norvegicus


Alignment Length:610 Identity:115/610 - (18%)
Similarity:212/610 - (34%) Gaps:193/610 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EEKEHNSNEMTTNLSSTGRIAASSSATPSAAAGGGASGAPTPPKSLALNQNHHYAPGSDTSGEQE 94
            :.||::.:..|.:::::..:.....  ||...|...:..|.||..|..::........:..|.:|
  Rat    21 QSKEYHISMETKSINTSEFLLPKME--PSKKMGAAGAAQPNPPLKLQPDRGAASVLVPEQGGYKE 83

  Fly    95 E--ELLDSRYECAICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCPMDNKRLSAEHDIFPDNY 157
            :  :.::.:|:|..|...|..|..|.||||||.||:.|.:..::..|....:.: .:..:|.||.
  Rat    84 KFAKTVEDKYKCEKCRLVLCNPKQTECGHRFCESCMAALLSSSSPKCTACQESI-IKDKVFKDNC 147

  Fly   158 TRREIEQLKRDCPNSSLGC--SVVASPIELH-------RHLP---------------------SC 192
            .:|||..|:..|.|...||  .:....:.:|       ..||                     :|
  Rat   148 CKREILALQIYCRNEGRGCVEQLTLGHLLVHLKNECQFEELPCLRADCKEKVLRRDLRDHVEKAC 212

  Fly   193 PYRRQ--------------QEPQEEKCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLMLQA-- 241
            .||..              |:.::..||...:.|     |....::..|::::..|:...:.|  
  Rat   213 KYREATCAHCKSQVPMITLQKHEDTDCPCVVVSC-----PHKCSVQTLLRSELSAHLSECVNAPS 272

  Fly   242 ----------FQQTAIATWQPHKPSTSGAAVENGHGQQQLPPPPQYANGVDEQI----------- 285
                      ||    .|.|..|...:.:||      |.:....:::|.:::::           
  Rat   273 TCSFKRYGCVFQ----GTNQQIKAHEASSAV------QHVNLLKEWSNSLEKKVSLLQNESVEKN 327

  Fly   286 --VQTMYQRIVVLE---QRTRE------------------QETRLENMQKQLRLARQQ------- 320
              :|:::.:|...|   :|.:|                  |..:|:.:.|::|..||.       
  Rat   328 KSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSM 392

  Fly   321 -------------------------------------------------APVDPRYS-------N 329
                                                             |.:|.|:.       |
  Rat   393 KSSVESLQNRVTELESVDKSAGQAARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN 457

  Fly   330 GTIVWRIEQLGALVARLRANANNQVYSHECYTSPHGYKFCARLNI----QPRKPHVLSLHVHLMQ 390
            |.::|:|.................:||...||...|||.|||:.:    ..:..| |||...:|:
  Rat   458 GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTH-LSLFFVIMR 521

  Fly   391 SENDYHLDWPFKGRIKLCMVHPADATLSQHDTIMTKPEILAFHKPREAISTRGFGFLEYAN---- 451
            .|.|..|.||||.::.|.::....:.....|.....|...:|.||.        |.:..|:    
  Rat   522 GEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPT--------GEMNIASGCPV 578

  Fly   452 --ISNIIQLG-FCADDRLLIKIEIN 473
              ...:::.| :..||.:.||:.::
  Rat   579 FVAQTVLENGTYIKDDTIFIKVIVD 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf6NP_511080.2 RING 103..141 CDD:238093 15/37 (41%)
Sina 163..>230 CDD:302762 17/110 (15%)
MATH_TRAF6 330..473 CDD:239745 38/153 (25%)
Traf3XP_038968511.1 RING-HC_TRAF3 93..134 CDD:319554 16/40 (40%)
zf-TRAF 178..234 CDD:280357 7/55 (13%)
zf-TRAF 239..289 CDD:424248 10/58 (17%)
Smc <294..>475 CDD:224117 22/186 (12%)
MATH_TRAF3 420..605 CDD:239746 42/193 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.