DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf6 and Traf6

DIOPT Version :9

Sequence 1:NP_511080.2 Gene:Traf6 / 31746 FlyBaseID:FBgn0265464 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001101224.1 Gene:Traf6 / 311245 RGDID:1306853 Length:530 Species:Rattus norvegicus


Alignment Length:533 Identity:145/533 - (27%)
Similarity:236/533 - (44%) Gaps:128/533 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 NEMTTNLSSTGRIAASSSATPSAAAGGGASGAPTPPKSLALNQNHHYAPGSDTSGEQEE------ 95
            |...::.||:...||.:::..:|......||.              .:.|:.:|...||      
  Rat     8 NSCASSQSSSDCCAAMANSCSAAMKDDSVSGC--------------VSTGNLSSSFMEEIQGYDV 58

  Fly    96 ---ELLDSRYECAICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCPMDNKRLSAEHDIFPDNY 157
               ..|:|:|||.||:..|.|.|.|.||||||::|:|..::.....||:||:.| .|:.:||||:
  Rat    59 EFDPPLESKYECPICLMALREAVQTPCGHRFCKACITKSIRDAGHKCPVDNEIL-LENQLFPDNF 122

  Fly   158 TRREIEQLKRDCPNSSLGC------------------SVVASP--------IELHRH-LPSCPYR 195
            .:|||..|...|||.  ||                  ::|..|        .::::| :..|| |
  Rat   123 AKREILSLTVKCPNK--GCVQKMELRHLEDHQVHCEFALVICPQCQRFFQKCQINKHIIEDCP-R 184

  Fly   196 RQQE--------PQEEK------CPFAKIKCDFVG------------------------------ 216
            ||..        |.|||      ||.|.|.|::.|                              
  Rat   185 RQVSCVNCAVPMPYEEKEIHDQSCPLANIICEYCGTILIREQMPNHYDLDCPTAPVPCTFSVFGC 249

  Fly   217 --RPETNQLEEHLKADMPHHMQLMLQAFQQTAIATWQPHKPSTSGAAVENGHGQQQLPPPPQYAN 279
              :.:.|.|..||:.:...||:|:.||.....::. :|...|:......        |..|.|  
  Rat   250 HEKMQRNHLARHLQENTQLHMRLLAQAVHNVNLSL-RPCDASSPSRGCR--------PEDPNY-- 303

  Fly   280 GVDEQIVQTMYQRIVVLEQRTREQETRLE-------NMQKQLR-LARQQAPVDPRYSNGTIVWRI 336
               |:.|:.:..|:|..:.:.||...::|       .:::.:| |..:.|.::.:..||..:|:|
  Rat   304 ---EETVKQLEGRLVRQDHQIRELTAKMETQSMHVSELKRTIRSLEDKVAEMEAQQCNGIYIWKI 365

  Fly   337 EQLGALVARLRANANNQVYSHECYTSPHGYKFCARLNIQ----PRKPHVLSLHVHLMQSENDYHL 397
            ...|..:..........::|...||...|||.|.||::|    .|..:.:||.||.||.|.|.||
  Rat   366 GNFGMHLKSQEEERPVVIHSPGFYTGRPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHL 430

  Fly   398 DWPFKGRIKLCMVHPADATLSQ-HDTIM-TKPEILAFHKPREAISTRGFGFLEYANISNIIQLGF 460
            .|||:|.|:|.::..::|.:.| |:.:| .|||:|||.:|....:.:|||::.:.::..:.|..|
  Rat   431 PWPFQGTIRLTILDQSEAVIRQNHEEVMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQGTF 495

  Fly   461 CADDRLLIKIEIN 473
            ..||.||::.|::
  Rat   496 IKDDTLLVRCEVS 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf6NP_511080.2 RING 103..141 CDD:238093 17/37 (46%)
Sina 163..>230 CDD:302762 28/139 (20%)
MATH_TRAF6 330..473 CDD:239745 52/148 (35%)
Traf6NP_001101224.1 Interaction with TAX1BP1. /evidence=ECO:0000250 1..362 113/447 (25%)
mRING-HC-C3HC3D_TRAF6 67..124 CDD:319557 25/56 (45%)
PLN03086 <132..219 CDD:178635 35/159 (22%)
TRAF6_Z2 157..183 CDD:407885 14/40 (35%)
zf-TRAF 204..261 CDD:280357 12/56 (21%)
DUF460 <273..>352 CDD:421465 21/90 (23%)
MATH_TRAF6 359..508 CDD:239745 33/88 (38%)
Interaction with TANK. /evidence=ECO:0000250|UniProtKB:Q9Y4K3 363..530 31/84 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343395
Domainoid 1 1.000 107 1.000 Domainoid score I6425
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3395
Inparanoid 1 1.050 174 1.000 Inparanoid score I3975
OMA 1 1.010 - - QHG50043
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 1 1.000 - - FOG0008003
OrthoInspector 1 1.000 - - oto98658
orthoMCL 1 0.900 - - OOG6_109516
Panther 1 1.100 - - LDO PTHR10131
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5961
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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