DRSC/TRiP Functional Genomics Resources

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Protein Alignment Traf6 and Trim27

DIOPT Version :10

Sequence 1:NP_511080.2 Gene:Traf6 / 31746 FlyBaseID:FBgn0265464 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001128446.1 Gene:Trim27 / 291171 RGDID:1310105 Length:513 Species:Rattus norvegicus


Alignment Length:330 Identity:65/330 - (19%)
Similarity:109/330 - (33%) Gaps:122/330 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 APGSDTSGEQEEELLDSRYECAICIDWLNEPVLTSCGHRFCRSCLT-AW-MQKNNQCCPMDNKRL 146
            |.||.....|:|.      .|.:|:.:..||::..|||..|.:||. .| ..:.|..||..    
  Rat     2 ASGSVAESLQQET------TCPVCLQYFVEPMMLDCGHNICCACLARCWGAAETNVSCPQC---- 56

  Fly   147 SAEHDIFPDNYTR---------REIEQLKRDCPNSSLG----CSVVASPIELHRHLPSCPYRRQQ 198
               .:.||..:.|         :.::||:.:.|:...|    |.....|::|:     |      
  Rat    57 ---RETFPQRHMRPNRHLANVTQLVKQLRTERPSGPDGEMGVCEKHREPLKLY-----C------ 107

  Fly   199 EPQEEKCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLMLQAFQQTAIATWQPHKPSTSGAAVE 263
              ::::.|.. :.||        :..||                                     
  Rat   108 --EQDQMPIC-VVCD--------RSREH------------------------------------- 124

  Fly   264 NGHGQQQLPPPPQYANGVDEQIVQTMYQRIVVLEQRTREQETRLENMQKQLRLARQQAPVD---- 324
            .||   .:.|..:...|..|||            |...:...|:::::|:.|...:||..:    
  Rat   125 RGH---SVLPLEEAVEGFKEQI------------QNRLDHLRRVKDLKKRRRAQGEQARAELLSL 174

  Fly   325 PRYSNGTIVWRIEQL--------GALVARLRA-------NANNQVYSHECYTSPHGYKFCARLNI 374
            .:.....|||..|||        ..|:|||..       :.|..:....|..| |.....|:|..
  Rat   175 TQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNIS-HLSGLIAQLEE 238

  Fly   375 QPRKP 379
            :.::|
  Rat   239 KQQQP 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf6NP_511080.2 mRING-HC-C3HC3D_LNX1-like 101..143 CDD:438299 14/43 (33%)
Sina 169..>230 CDD:460824 11/64 (17%)
MATH_TRAF6 330..473 CDD:239745 17/65 (26%)
Trim27NP_001128446.1 RING-HC_TRIM7-like_C-IV 9..69 CDD:438256 19/72 (26%)
Bbox2_TRIM7-like 94..137 CDD:380820 12/104 (12%)
COG4372 <132..>301 CDD:443500 27/125 (22%)
SPRY_PRY_TRIM27 315..491 CDD:293986
Blue background indicates that the domain is not in the aligned region.

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