DRSC/TRiP Functional Genomics Resources

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Protein Alignment Traf6 and Trim52

DIOPT Version :10

Sequence 1:NP_511080.2 Gene:Traf6 / 31746 FlyBaseID:FBgn0265464 Length:475 Species:Drosophila melanogaster
Sequence 2:XP_063130242.1 Gene:Trim52 / 290458 RGDID:1565615 Length:236 Species:Rattus norvegicus


Alignment Length:104 Identity:29/104 - (27%)
Similarity:48/104 - (46%) Gaps:32/104 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 SGAPTPPKSLALNQNHHYAPGSDTSGEQEEELLDSRYECAICIDWLNEPVLTSCGHRFCRSCLT- 129
            :|.|:|.:||                 :||.:      ||||:|:..:||...|||.|||.|:| 
  Rat     5 TGPPSPMQSL-----------------REEAV------CAICLDYFKDPVSIGCGHNFCRGCVTQ 46

  Fly   130 AWMQKNNQCCPMDNKRLSAEHDIFPD----NYTRREIEQ 164
            .|.:::.|    |.:..:..:.:..:    .||.:|:.|
  Rat    47 LWGKEDEQ----DREPPAVGNHVIREVLFHRYTEQEVFQ 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf6NP_511080.2 mRING-HC-C3HC3D_LNX1-like 101..143 CDD:438299 17/42 (40%)
Sina 169..>230 CDD:460824
MATH_TRAF6 330..473 CDD:239745
Trim52XP_063130242.1 None
Blue background indicates that the domain is not in the aligned region.

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