DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf6 and Traf2

DIOPT Version :9

Sequence 1:NP_511080.2 Gene:Traf6 / 31746 FlyBaseID:FBgn0265464 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001277342.1 Gene:Traf2 / 22030 MGIID:101835 Length:508 Species:Mus musculus


Alignment Length:559 Identity:116/559 - (20%)
Similarity:190/559 - (33%) Gaps:204/559 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 ASGAPTPPKSLALNQNHHYAPGSDTS--GEQEEELLDSRYECAICIDWLNEPVLTSCGHRFCRSC 127
            |:.:.|.|.||.|.|     ||...:  |.:    |:::|.|:.|.:.|..|....||||:|..|
Mouse     2 AAASVTSPGSLELLQ-----PGFSKTLLGTR----LEAKYLCSACKNILRRPFQAQCGHRYCSFC 57

  Fly   128 LTAWMQ----------KNNQCCPMDNK-----RLSAEHDIFPDNYTRREIEQL------------ 165
            ||:.::          :|...|..:..     .:......||||..|||:|.|            
Mouse    58 LTSILRCASILSSSGPQNCAACVYEGLYEEGISILESSSAFPDNAARREVESLPAVCPNDGCTWK 122

  Fly   166 -------------------------------------KRDCPNSSLGCSVVASP---IELHRHLP 190
                                                 :::||..||.|....:|   ::|..|..
Mouse   123 GTLKEYESCHEGLCPFLLTECPACKGLVRLSEKEHHTEQECPKRSLSCQHCRAPCSHVDLEVHYE 187

  Fly   191 SCP--------YRRQQEPQE------EKCPFAKIKCDF--VG---RPETNQLEEHLKADMPHHMQ 236
            .||        ..:::.|:|      ..|...::.|.|  ||   ..||..|::|....:..|:.
Mouse   188 VCPKFPLTCDGCGKKKIPRETFQDHVRACSKCRVLCRFHTVGCSEMVETENLQDHELQRLREHLA 252

  Fly   237 LMLQAFQQTAIATWQPHKPSTSGAAVENGHGQQQLPPPPQYANGVDEQIVQTMYQRIVVLEQR-- 299
            |:|.:|.:.                              |.:.|...|:...:.||..:|||:  
Mouse   253 LLLSSFLEA------------------------------QASPGTLNQVGPELLQRCQILEQKIA 287

  Fly   300 ---------TREQE--------------------TRLENMQKQLR------------LARQQAPV 323
                     .||.|                    ..|.|..:||.            |.::.:.:
Mouse   288 TFENIVCVLNREVERVAVTAEACSRQHRLDQDKIEALSNKVQQLERSIGLKDLAMADLEQKVSEL 352

  Fly   324 DPRYSNGTIVWRIEQLGALVARLRANANNQVYSHECYTSPHGYKFCARLNIQ----PRKPHVLSL 384
            :....:|..:|:|...........|.....::|...|||.:|||.|.|:.:.    .|..| |||
Mouse   353 EVSTYDGVFIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTH-LSL 416

  Fly   385 HVHLMQSENDYHLDWPFKGRIKLCMVHPADATLSQHDTIMTKPEIL--AFHKPREAISTRGFGFL 447
            ...:|:..||..|.|||..::.|.::   |....:|.....:|::.  :|.:|           :
Mouse   417 FFVVMKGPNDALLQWPFNQKVTLMLL---DHNNREHVIDAFRPDVTSSSFQRP-----------V 467

  Fly   448 EYANISNIIQLGFC------------ADDRLLIKIEINI 474
            ...||::...| ||            .||.:.||..:::
Mouse   468 SDMNIASGCPL-FCPVSKMEAKNSYVRDDAIFIKAIVDL 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf6NP_511080.2 RING 103..141 CDD:238093 14/47 (30%)
Sina 163..>230 CDD:302762 23/137 (17%)
MATH_TRAF6 330..473 CDD:239745 40/160 (25%)
Traf2NP_001277342.1 zf-C3HC4 34..79 CDD:278524 13/44 (30%)
zf-TRAF 185..242 CDD:280357 13/56 (23%)
TRAF_BIRC3_bd 274..336 CDD:293278 12/61 (20%)
Important for interaction with BIRC2 and BIRC3 290..300 1/9 (11%)
MATH_TRAF2 341..504 CDD:239747 41/178 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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