DRSC/TRiP Functional Genomics Resources

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Protein Alignment Traf6 and pdzrn3b

DIOPT Version :10

Sequence 1:NP_511080.2 Gene:Traf6 / 31746 FlyBaseID:FBgn0265464 Length:475 Species:Drosophila melanogaster
Sequence 2:XP_073808503.1 Gene:pdzrn3b / 100005518 ZFINID:ZDB-GENE-071022-4 Length:1065 Species:Danio rerio


Alignment Length:231 Identity:53/231 - (22%)
Similarity:95/231 - (41%) Gaps:46/231 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 LDSRYECAICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCPMDNKRLSAE--HDIFPDNYTRR 160
            :|..::|.:|...|.:|:.|.|||.||..|:..|:.:.:. ||:..:|:|.:  :.:.|   .:.
Zfish    12 VDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSS-CPVKCQRISTKELNHVLP---LKN 72

  Fly   161 EIEQLKRDCPNSSLGCSVVASPIELHRHLPSCPYRRQQEPQEEKCPFAKIKCDFVGRPETNQLEE 225
            .|.:|...|.|.:.||..:.....|..|             .|.|.::..||...|..|...|: 
Zfish    73 LILKLDIKCDNHARGCEKIVKLQHLAEH-------------AEMCDYSPAKCRNKGCSEVLNLK- 123

  Fly   226 HLKADMPHHMQLMLQAFQQTAIATWQPHKPSTSGAAVENGHGQQQLP-----PPPQYANGVDEQI 285
                ||..||:   ::....|:...:      ||..:...|.:|:|.     ...:..||     
Zfish   124 ----DMDAHMR---ESCDYRAVGICE------SGCGLMLTHKEQKLDNHCCLKALKAHNG----- 170

  Fly   286 VQTMYQRIVVLEQRTREQETRLENMQKQLRLARQQA 321
              .:..::|.|::..::|..:....:|.| ||:..|
Zfish   171 --ALQGKVVTLDKELKKQALKSTKREKSL-LAQLSA 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf6NP_511080.2 mRING-HC-C3HC3D_LNX1-like 101..143 CDD:438299 14/41 (34%)
Sina 169..>230 CDD:460824 13/60 (22%)
MATH_TRAF6 330..473 CDD:239745
pdzrn3bXP_073808503.1 None
Blue background indicates that the domain is not in the aligned region.

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