DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf6 and LOC100005446

DIOPT Version :9

Sequence 1:NP_511080.2 Gene:Traf6 / 31746 FlyBaseID:FBgn0265464 Length:475 Species:Drosophila melanogaster
Sequence 2:XP_001344501.3 Gene:LOC100005446 / 100005446 -ID:- Length:584 Species:Danio rerio


Alignment Length:614 Identity:121/614 - (19%)
Similarity:203/614 - (33%) Gaps:238/614 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 ASGAPTPPKSLALNQNHHYAPGSDTSGEQEEELLDSRYE----CAICIDWLNEPVLTSCGHRFCR 125
            |:..|:||.|:..|:     ||.      .:::|.::.|    |..|.:.|..|....||||||.
Zfish     2 AAQEPSPPSSMENNK-----PGF------PKKILANKLEDKHLCNCCQNILRRPFQAQCGHRFCS 55

  Fly   126 SCLTAWM----QKNNQCCPMD----NKRLSAEHDIFPDNYTRREIEQL----------------- 165
            .|....:    ||.|.|...|    ...:..:...||||..|||:|.|                 
Zfish    56 YCFNRTVGSGPQKCNACIKEDIFEEPTSILKQGCAFPDNAARREVENLPAVCFNEGCSWKGSIKD 120

  Fly   166 --------------------------------KRDCPNSSLGCSVVASPI---ELHRHLPSCP-- 193
                                            :|:||..:|.|.....|.   .:..|...||  
Zfish   121 YELSHEGKCEFMILPCPLCKELIRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDEICPKY 185

  Fly   194 ------YRRQQEPQEE-------------KCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLML 239
                  ..:::.|:|:             .|.:..:.||.:  .|..::.||.:|....|:.|:|
Zfish   186 PMICEGCAKKKIPREKYVDHIKFCSKFRTPCRYHVVGCDML--VEKEKIHEHERACAHEHLNLLL 248

  Fly   240 QAF--QQTAIATWQP-------HK---------------PSTSGAAVE--------NGHGQQQLP 272
            ...  .:.::...||       ||               ...|||.|:        :.......|
Zfish   249 HYIMGMKVSLEGLQPQSLDLAGHKAHELHQALRDLETRVSQLSGAPVQGVPSSSSSSSASSSAAP 313

  Fly   273 PPP------------------------------------------QYANGVDEQIVQTMYQRI-- 293
            |||                                          :...|..|.:|..:.:.:  
Zfish   314 PPPAPTATLPTSFTPLPSSVGAALELQLHSEKTKVADLGRRCQDLEVKAGTFEDVVCVLNREVER 378

  Fly   294 --VVLEQRTRE---QETRLENMQKQLRLARQQ--------APVDPRYS-------NGTIVWRI-- 336
              ..:|...|:   .:.::|.:..::|...:|        |.::.|..       :|..:|||  
Zfish   379 FATTMEASNRQHRLDQDKIEALSNKVRQLERQVGVKDLTVAEMEGRLREMSATTFDGVFIWRISD 443

  Fly   337 ---EQLGALVARLRANANNQVYSHECYTSPHGYKFCARLNIQ----PRKPHVLSLHVHLMQSEND 394
               ::..|:..|..|     ::|...|||.:|||.|.|:.:.    .|..| |||...:|:..:|
Zfish   444 FTKKRQDAIAGRAPA-----MFSPAFYTSKYGYKMCLRIYLNGDGTGRGTH-LSLFFVVMRGMSD 502

  Fly   395 YHLDWPFKGRIKLCMVHPADATLSQHDTIMTKPEIL--AFHKPREAISTRGFGFLEYANISNIIQ 457
            ..|.|||..::.|.::   |.:..:|.....:|:|.  :|.:|           :...||::...
Zfish   503 ALLKWPFNQKVTLMLL---DQSNREHIIDAFRPDITSSSFQRP-----------VSEMNIASGCP 553

  Fly   458 LGFC------------ADDRLLIKIEINI 474
            | ||            .||.:.||..:::
Zfish   554 L-FCPLAKLEGKNSYIRDDTIFIKAIVDL 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf6NP_511080.2 RING 103..141 CDD:238093 16/45 (36%)
Sina 163..>230 CDD:302762 19/139 (14%)
MATH_TRAF6 330..473 CDD:239745 43/165 (26%)
LOC100005446XP_001344501.3 RING 36..69 CDD:214546 11/32 (34%)
zf-TRAF 178..235 CDD:280357 9/58 (16%)
TRAF_BIRC3_bd 350..412 CDD:293278 8/61 (13%)
MATH 419..580 CDD:295307 45/181 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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