DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18262 and AT5G04390

DIOPT Version :9

Sequence 1:NP_572453.1 Gene:CG18262 / 31745 FlyBaseID:FBgn0030012 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_196059.1 Gene:AT5G04390 / 830318 AraportID:AT5G04390 Length:362 Species:Arabidopsis thaliana


Alignment Length:490 Identity:93/490 - (18%)
Similarity:138/490 - (28%) Gaps:245/490 - (50%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ELHEELAKEASPDLEEEEEEKEEGSKRQHYQR----------AAAMKNTLVETREDLLDIELDWT 138
            |..||..||.|..|      |.:.:|||..|.          .:..:|.:.|...| ||.:.:..
plant     2 EAFEEATKEQSLIL------KGKRTKRQRPQSPIPFSISPPIVSTPENNMEEEYTD-LDSKDNAL 59

  Fly   139 GGEQSEH-------------------NETHEEEEGESDDD-------------------DTKDSN 165
            |.::..|                   |.|.:..|.|.|.|                   ...:||
plant    60 GNDEGNHKKDGVITSSSSSASWSSQNNHTLKAAEDEEDQDIANCLILLAQGHSLPHNNHHLPNSN 124

  Fly   166 DTKDMLFQCDQCDRAYNTKRSLQSHRRLKHSEANGGSLDKSASERNSKKRKGPPKVYKCNEEACN 230
            :.              ||.| ..|.|.|:.|.:|.|.             |....||:|  :.|:
plant   125 NN--------------NTYR-FTSRRFLETSSSNSGG-------------KAGYYVYQC--KTCD 159

  Fly   231 QTFRTERDLRGHRWKHTGIFCDICGKPFTQSGNMMRHRQRHSGIKPHKCPECDATFYTQKELSSH 295
            :||.:.:.|.|||                               ..||.|:. |:||:..:|..:
plant   160 RTFPSFQALGGHR-------------------------------ASHKKPKA-ASFYSNLDLKKN 192

  Fly   296 -------SICHTGRMPCICEVCGRPCRDRGVLTAHMRRHTGERPAKCEVCGKAFYSFHDLNVHAV 353
                   |:.||                    |..:.::...|  ...|.|||            
plant   193 TYANDAVSLVHT--------------------TTTVFKNNNSR--SLVVYGKA------------ 223

  Fly   354 SHTNLRPFVCDVCGSTFQRKKALRVHKLLHSEQRKYACKLCGKTFAQSGGLNAHMRSHDPARVKG 418
                                          |:.:.:.|.:||..|.....|..|||.|..|.|..
plant   224 ------------------------------SKNKVHECGICGAEFTSGQALGGHMRRHRGAVVVP 258

  Fly   419 AVKPLPQSVTI-----------------EVIEG---------KSPPTTTITMAIDLNV------- 450
            ||  :..:||:                 ::.:|         |....|.:::.:|||:       
plant   259 AV--IAPTVTVATAAANTELSLSSMSFDQISDGHQDHLAMPAKKKARTVVSLDLDLNLPAPEDEN 321

  Fly   451 ---------------EEQLVKQTE-------TAPT 463
                           |.|..||.|       :|||
plant   322 RVNGFSFASKQNHEQEHQQKKQREEPKSLVLSAPT 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18262NP_572453.1 C2H2 Zn finger 224..246 CDD:275368 8/21 (38%)
C2H2 Zn finger 251..271 CDD:275368 0/19 (0%)
COG5048 <256..415 CDD:227381 26/165 (16%)
zf-H2C2_2 263..288 CDD:290200 5/24 (21%)
C2H2 Zn finger 279..327 CDD:275368 9/54 (17%)
zf-H2C2_2 320..342 CDD:290200 5/21 (24%)
C2H2 Zn finger 335..355 CDD:275368 4/19 (21%)
C2H2 Zn finger 363..383 CDD:275368 0/19 (0%)
zf-C2H2 389..411 CDD:278523 8/21 (38%)
C2H2 Zn finger 391..411 CDD:275368 8/19 (42%)
AT5G04390NP_196059.1 zf-C2H2_6 152..178 CDD:290623 12/58 (21%)
zf-C2H2_6 228..253 CDD:290623 9/24 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.