DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18262 and AT2G28200

DIOPT Version :9

Sequence 1:NP_572453.1 Gene:CG18262 / 31745 FlyBaseID:FBgn0030012 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_180387.2 Gene:AT2G28200 / 817366 AraportID:AT2G28200 Length:286 Species:Arabidopsis thaliana


Alignment Length:374 Identity:75/374 - (20%)
Similarity:118/374 - (31%) Gaps:139/374 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 EKEEGS--------KRQHYQRAAAMKNTLVETREDLLDIELDWTGGEQSEHNETHEEEEGESDDD 159
            :.|.||        ||...||::   :|.|.|....:.......||...|...:.|.....|...
plant     5 QDEVGSDQTQIIKGKRTKRQRSS---STFVVTAATTVTSTSSSAGGSGGERAVSDEYNSAVSSPV 66

  Fly   160 DTKDSNDTKDMLFQCDQCDR-----AYNTKRSLQSHRRLKHSEANGGSLDKSASERNSKKRKGPP 219
            .|..:.:.:||........|     :.:.|.|.:.|:::             :||.:|.      
plant    67 TTDCTQEEEDMAICLIMLARGTVLPSPDLKNSRKIHQKI-------------SSENSSF------ 112

  Fly   220 KVYKCNEEACNQTFRTERDLRGHRWKHTGIFCDICGKPFTQSGNMMRHRQRHSGIKPHKCPECDA 284
            .||:|  :.||:||.:.:.|.|||..|.        ||.|.:....|        .|...|:..|
plant   113 YVYEC--KTCNRTFSSFQALGGHRASHK--------KPRTSTEEKTR--------LPLTQPKSSA 159

  Fly   285 TFYTQKELSSHSICHTGRMPCICEVCGRPCRDRGVLTAHMRRHTGERPAKCEVCGKAFYSFHDLN 349
               :::..:||                                       .:|.|.|..|     
plant   160 ---SEEGQNSH---------------------------------------FKVSGSALAS----- 177

  Fly   350 VHAVSHTNLRPFVCDVCGSTFQRKKALRVHKLLHSEQRKYACKLCGKTFAQSGGLNAHMRSHDPA 414
             .|.:..|                ||.:||:          |.:||..|.....|..|||.|   
plant   178 -QASNIIN----------------KANKVHE----------CSICGSEFTSGQALGGHMRRH--- 212

  Fly   415 RVKGAVKPL-PQSVTIEVIEGKSPPTTTITMAIDLNVEEQLVKQTETAP 462
              :.||..: |.:.|.||....:..      .|::|:...:.:|.:..|
plant   213 --RTAVTTISPVAATAEVSRNSTEE------EIEINIGRSMEQQRKYLP 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18262NP_572453.1 C2H2 Zn finger 224..246 CDD:275368 9/21 (43%)
C2H2 Zn finger 251..271 CDD:275368 4/19 (21%)
COG5048 <256..415 CDD:227381 28/158 (18%)
zf-H2C2_2 263..288 CDD:290200 4/24 (17%)
C2H2 Zn finger 279..327 CDD:275368 4/47 (9%)
zf-H2C2_2 320..342 CDD:290200 2/21 (10%)
C2H2 Zn finger 335..355 CDD:275368 5/19 (26%)
C2H2 Zn finger 363..383 CDD:275368 4/19 (21%)
zf-C2H2 389..411 CDD:278523 8/21 (38%)
C2H2 Zn finger 391..411 CDD:275368 8/19 (42%)
AT2G28200NP_180387.2 zf-C2H2_6 114..140 CDD:404748 12/35 (34%)
zf-C2H2_6 189..213 CDD:404748 11/38 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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